Detailed information on CNT30243709


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43210|PALY_WHEAT, E-value = 4e-169

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30144087Avena sativaMedicago truncatula18.6445.5481.7153forward

Expression of CNT30243709

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MRFCCVAVPFSTAHRADSTSLGSAARSSSSNVASLANTEVSTSRSASPLAKACSTRTARIFCISG*

>peptide 2 (37 aa)
MCFPWFMATNTLSTSSPGDLVFSPVKYSVPSSLRTKR*

>peptide 3 (69 aa)
MWRRSIAWHNATKNVEDMSFKISIASAVFLEEMRPRELTSWLCCSALCTWLVTGLPKNWSSEQYEAMAIS

>peptide 4 (68 aa)
MTGIRRCGSAAWQCHSPRRTGQTRPPLEAPHGVPPRMWRAWRTPKSPHPARPHHWPRRAPRELHASSA*

Sequence

>CNT30243709
GAATTCTGAAGTACTCTATTTTTGAGTTCGTTGATTCAGTCTTCAGAAGATAGGCAGGGGCTCACCGTTCCACTCCTTGAGGCACTCAAGCAGCGCGTCG
ATGTGCTTCCCCTGGTTCATGGCAACGAATACCTTGTCCACCTCTTCACCAGGAGACCTCGTCTTCTCTCCGGTCAAGTACTCCGTTCCGAGCTCCTTGC
GCACGAAGCGATAGAGCGGGTATGACCGGCATTCGGCGATGCGGTTCTGCTGCGTGGCAGTGCCATTCTCCACGGCGCACCGGGCAGACTCGACCTCCCT
TGGAAGCGCCGCACGGAGTTCCTCCTCGAATGTGGCGAGCTTGGCGAACACCGAAGTCTCCACATCCCGCTCGGCCTCACCATTGGCCAAGGCGTGCTCC
ACGAGAACTGCACGCATCTTCTGCATAAGTGGGTAGTTGGCGCTGCAAGGGTCATCCGCGTAGGCGAACACAGCCTCGCGGTCGATCGTCAAGAGCAGGT
CCTTCTCGCAGAAGCGTGCGTTGTGGAGATTGCCATTGTCATTGGTGCTCAGGGTCTTCCTTGCCACTGTCTTCACACAATTCTTGACGGCATTCTTGAC
ATTCTCCTCGATGTGGCGGAGGTCAATTGCCTGGCACAACGCGACCAAGAATGTCGAGGACATGAGCTTCAAAATATCAATTGCCTCGGCGGTCTTCCTA
GAAGAGATGAGACCGAGAGAGTTGACGTCTTGGTTGTGCTGCTCCGCACTCTGCACATGGTTAGTCACAGGGTTGCCCAAGAACTGGAGCTCAGAGCAGT
ACGAGGCCATGGCAATCTCAG