Detailed information on CNT30243612


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30223402Avena sativaHordeum vulgare6.7829.8986.92130reverse complement

Expression of CNT30243612

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MPSGMQLVFHVFSFMSPLVKDLAAHELGTFLWHLVDELVLILFFCSQDLGINDLPVFQAILGGMNSSGLFQFYCGY*

>peptide 2 (60 aa)
GSPRRTAKLHRFVAKHGDASARSISERARRRETAIHGGIKPRQHKLWVGIWIYPIRSASA*

>peptide 3 (80 aa)
MVLHGAPRSFTDLLLSMEMPALDPFLSALEEERLPSTEESSLDSTSSGSGSGSTQFDLPPREYGGTNDSNSSSESVPDEI*

>peptide 4 (36 aa)
MLVPLCLFSLCVNLYGALYLSVVTFYVNSSTLDLGD*

>peptide 5 (31 aa)
MMSAYISSYFHAAWYRPCSSACWASLILAAL*

>peptide 6 (30 aa)
MQLGIDLVPALAGPVSFLLLFKAVKGVDKS*

>peptide 7 (30 aa)
MGSPRQIRAGVFLLVPLEENLLAMPFVLRI*

Sequence

>CNT30243612
ATGGTTCTCCACGGCGCACCGCGAAGCTTCACCGATTTGTTGCTAAGCATGGAGATGCCAGCGCTAGATCCATTTCTGAGCGCGCTCGAAGAAGAGAGAC
TGCCATCCACGGAGGAATCAAGCCTAGACAGCACAAGCTCTGGGTCGGGATCTGGATCTACCCAATTCGATCTGCCTCCGCGTGAGTACGGAGGAACCAA
CGATTCAAATTCATCGTCGGAGAGTGTCCCGGACGAGATTTAAGGAGGTGGCGCGCGGGTAACGCAAGAAGATCCTAGCTTCAGATACACCCAAGATCCG
GCTGATTCGCCTCCTTGTGCTTGGAAGAATAGGTACCAAACTATGCTGAACCTTGTGTCTATTTCAGCCTGGCTTGTATTCAGTGAACTCTGACAACGAT
AGATTATAGATTCGACTCAGCCTTATTTATTGTAGATTTATGCGAATGTGGTACATGATATGAGAGGTAATCTGAATGCGTGTTTCATGATTAGGGCCAA
CCAATATATAGTTTTATTTTTCTGTCAGGCTTCGTCAGGTTTCTGAGAGCAAATATGTGGTGCCTTGTTGTTTGCCCGTTCGGTCCCTAAAATTGATTCA
CCTCAATGCTAGTTGTCAATTCTAATGCGTTAGTCTGTTCTCCCATAGGTAGACAATAGTCACAACTACATGAGGTTCTAGCTAGGCTAAATTGAGAATG
CAATCTCAATTTGACACCATTTTACAAGTAATTTCTTAGTGGAGATATAACAATCCGAGCCGGCTGCTGTATGGTTCATTTAAATAGAAGTCAATTTATG
CCTGAACTGTTACCTATGAAGTCTCATCTCTAAACATAGGAAGGTTTGCGGAAGAATTAGAACATTTGCGTGCCGAACTAAATATTGTTGTAGATTTCAG
GTTAATGCTAGTGCCTCTGTGTCTGTTTTCACTTTGTGTTAACCTGTACGGAGCCTTGTATCTCAGTGTAGTTACTTTTTATGTAAACAGTTCCACGTTG
GACCTTGGTGATTGAATTTTGAACTTTATGCAAATAGGATGACTTTTCTCATGCATTACCATTAAATAAAGTGCATAAATGAACTCTAATGGAAACCAAA
AGGGTTTTTATAAATTGAACTCTGGTTGGTAAACAGCTGATATATTTGATATTAAGATCTTCCTAGGAAGTAATCAGGCGTCCAGATTTTGTCTGGACGG
TGCTACGGAGTTGTTACATAGTCCCTGTAAACAACTTATAAAGTTCCGGATCAGATTTATAAAGTCCTGCTAGCTGGAAAAATTCTCCCATGGGGTCCCC
ACGTCAAATTAGAGCCGGTGTCTTCTTACTCGTACCATTGGAAGAGAACCTGCTTGCCATGCCATTTGTATTGCGAATATAATGATGTCCGCGTATATAT
CTTCTTACTTCCATGCAGCTTGGTATAGACCTTGTTCCAGCGCTTGCTGGGCCAGTCTCATTCTTGCTGCTCTTTAAGGCAGTGAAGGGTGTGGACAAAT
CATAATCTCTTCTTTCACTCCTTGGTAGCATTCTTCCCATCTACAAGGAGGTTTATGCCGAGCGGAATGCAGCTGGTGTTTCATGTATTCAGTTTCATGA
GCCCCCTTGTTAAGGACCTGGCTGCTCACGAATTGGGCACATTCCTCTGGCATTTGGTGGACGAGTTGGTTCTTATTTTATTCTTTTGTTCTCAAGACTT
GGGTATTAATGATCTACCGGTATTTCAAGCAATCCTTGGAGGAATGAATTCATCAGGCTTGTTTCAGTTTTATTGTGGGTATTAATTCTATGACGTACCT
GTCTATAATTTATGAAGTTCTTTGGAGATGTTCATGACGTACCAGTCTCTCATTTATGAAGTTCTTTGGATATGTTACTGACATACCAGTCTATAATTTA
TAATTTATATTTAGCTCA