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Detailed information on CNT30243491


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43217|H2B3_WHEAT, E-value = 8e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671720Avena sativaSetaria viridis19.7538.9896175forward
CNT30522940Avena sativaSetaria italica23.1429.1295.12205forward
CNT30307773Avena sativaTriticum aestivum37.4750.8493.67332forward
CNT30657146Avena sativaTriticum dicoccoides23.737.0495.71210forward
CNT3066775Avena sativaLeersia perrieri15.9136.7294.33141forward
CNT30686967Avena sativaTriticum urartu22.6934.696.02201forward
CNT30570929Avena sativaVitis vinifera21.4428.3283.16190forward
CNT30557628Avena sativaPanicum hallii19.1930.5294.12170forward

Expression of CNT30243491

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSLMKEFMMDMALEEMPMSGCTCLRTLKM*

>peptide 2 (41 aa)
MLGELAGEDEADGGLDLPGGDGGLLVVAGELGGRRSGSPGR*

>peptide 3 (68 aa)
KFLYCRQRVCNMNMTIQGIQDPSIPNNHSDFTIPISRHCQNTFNLEDVKHEHMTDHMEVETQYHFYSR*

Sequence

>CNT30243491
CCAAGTTCTTATACTGCAGGCAAAGAGTATGCAATATGAATATGACAATTCAAGGCATTCAAGATCCTTCAATTCCTAATAATCATTCAGATTTCACAAT
TCCAATTTCTCGACATTGTCAAAACACATTCAATCTAGAAGATGTTAAGCACGAGCACATGACAGATCATATGGAGGTGGAAACGCAGTACCATTTCTAT
TCAAGATAGTAGTTGATCTTACATCATCCCAAGAGACAGCGAAACCATCCTAAACTACTAGCAGTTGCAAGGCAACCTAAGAAGACGTGAACTTGGTGAC
AGCCTTCGTGCCCTCGGAGACGGCATGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGGACGGAGGTCTGGATCTCCCGGGAGGTGATGGTGGGCTTCTTG
TTGTAGCGGGCGAGCTTGGCGGACGGAGGTCTGGATCTCCCGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGGCGAGCTTGGCGGACTCCCCAGCAAGC
TTTTCGAAGATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCCGGGTGCACCTGCTTGAGGACCTTGAAGATGTAGA
TCTTGTAGGTCTCGACGCTCTTCTTCGCCTTCTTCTTGCCCTTCTTCGCCTCGCCGCCCTCCTTGGCTGCGGTCTTCGCCGCCGGCAGCCGCTTCTCCGC
CTTGGGCTTCTTCCCCGCCGGGGTCTTCTCGGCTTTCTCCGCCGCGGGCTCCTCCTCCACGGGCTTCTTCGCCGCCGGCTTCTTCTCCGCCTTGGGGGCC
ATGGGTGATTCTCGGGAGAGAGTAGAGGGTGTGGTGGGGATTCGCACGGAGGTGGGAGAACAGGTGGGGAATTGCAGATGGGATGT