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Detailed information on CNT30242975


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 7e-102

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690921Avena sativaOryza sativa63.0128.992.47465forward
CNT30308637Avena sativaTriticum aestivum64.6325.1893.08477forward
CNT30349330Avena sativaEragrostis tef62.8729.9493.1464forward
CNT30595806Avena sativaOryza meridionalis61.7972.9692.54456forward
CNT30107350Avena sativaOryza longistaminata63.0153.8892.9465forward

Expression of CNT30242975

Peptides detected in this lncRNA

>peptide 1 (55 aa)
KKDCRPMHRELLEQEHSSKEIIRHTDFDTKLRVHLFIHHDSSKAASPQQKFVGTE*

>peptide 2 (61 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICMPPRRRRTRWRVDSFWML*

>peptide 3 (49 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICICKYKA*

Sequence

>CNT30242975
GAAGAAAGACTGCAGACCAATGCATCGGGAACTATTAGAACAAGAACACAGCAGCAAAGAGATAATCAGACACACAGATTTTGACACTAAGTTGAGGGTT
CACTTATTCATTCATCACGATTCATCCAAAGCTGCTTCACCACAGCAGAAGTTTGTAGGCACAGAATAAAGTCACACTAACAAGGCAGGACCAAATACAC
TACCAGACGACACACCGAAGAGACCAGACTTGTGAACCCAGAGACAGAACCAGCTCCTTACTGCCCACCACGGAGGCGAAGCACCAGGTGGAGGGTGGAC
TCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCT
GGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATGCCTCCACG
GAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCAAAGATGAGGCGCTGC
TGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGG
TCTTCACAAAGATCTGCATCTGTAAATACAAAGCATAG