Detailed information on CNT30242973


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 4e-150

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30458211Avena sativaSaccharum spontaneum24.6877.2889.43653forward

Expression of CNT30242973

Peptides detected in this lncRNA

>peptide 1 (62 aa)
TRHQCKKYKNPKEQDTKNQCILEQEHSSKEICRHKDLTLKFRVHLFIHHGSSRLLHHRCRSL*

>peptide 2 (68 aa)
MQLLTGHHGDGAPSEGWTPSGCCSPPGCGHPQAACQRRSDAAGPGGCPPCPGSWPSHCQWCLMTPPPG*

>peptide 3 (52 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICICTYKGEQS*

>peptide 4 (53 aa)
MPSLSWIFALTLSMVSEDSTSRVMVLPVRVLTKICMPPRSLSTRWRVDSFWML*

>peptide 5 (40 aa)
MEISRTQAIHVPQAMVQEIGNSYTSNEQATHATKFSKFKY*

>peptide 6 (44 aa)
MPSLSWILAFTLSMVSDDSTSRVMVLPVRVLTKICMPPRRRSTR*

>peptide 7 (29 aa)
MLGTETEQMLGTETEHLRILLCTCRYPCE*

>peptide 8 (30 aa)
MQKFVRHMYITLDHNTAGTNTRRDQTRAHR*

>peptide 9 (30 aa)
MDWSTPKTTRLVNPETDATPYWPPRRRSTK*

Sequence

>CNT30242973
ACGAGACACCAATGCAAGAAATATAAAAATCCAAAAGAACAAGATACTAAAAACCAATGCATATTAGAACAAGAACACAGCAGCAAAGAGATATGCAGAC
ACAAGGATTTGACTCTTAAGTTCAGGGTTCACTTATTCATTCATCACGGTTCATCAAGGTTGCTGCATCACAGATGCAGAAGTTTGTAAGACACATGTAC
ATCACACTTGACCACAATACGGCAGGAACAAATACACGACGAGACCAAACGAGGGCACACCGATAGCTCCAATGGACTGGAGCACACCGAAGACCACCAG
ACTAGTAAACCCAGAGACAGATGCAACTCCTTACTGGCCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGG
GTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGG
TGTCTGATGACTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCATGCCACCACGGAGACGGAGCACAAGGTGAAGGGTGGA
CTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCGTCCTCTAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCC
TGGATCTTCGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCATGCCACCAC
GGAGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTG
CTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCAATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGG
GTCTTCACGAAGATCTGCATCTGTACATACAAAGGAGAGCAGAGTTAAGGCACAGTAAATGGAAATCAGCAGGACACAAGCAATACATGTACCACAGGCC
ATGGTCCAAGAGATAGGCAACTCATACACAAGTAACGAACAAGCAACTCATGCAACCAAGTTTAGCAAATTCAAGTACTAGCAGACTGGCAGTCATATGC
TCCAGTAGGCAACAAACTAGGCGAGTCTAAATGAATCAATAATAATATCATCAAGCACACATGATTTGCAGAGTATAACCGTTGGATAAGCTTAGGTAAA
TTCCAGGCATATCACTTCACAAATCAGGGATAGGCGCTGTAGGGCACAAAGCGGGAGCGCTACAAAATTAGATATCCACAAAAAACACTGCCACGATTTT
AGCTCCAACCGATCAGAATCTGCCAGCGACACCTAGACAGCAGAGATTTCTCTCCAACCGAGTAGAATCAGCAAACTACATCTAGACAGATAAACAGAAC
CACCAGAATCTCAAATCGGCAGATCCACACAATAATCGAAGCATACTCAAGAGGAATCAACCATGACAACAGCAATCGATCAAGACTAAGTACCACCGGC
CACAACTCTACTGCAAACTACTAAGTTATCAAGGATTCTAGATAAAGGATGGAAGAAGCGACTCATACAACCAGGTTTTAGCAAAGTTCTATCAGCCCTA
TGCTTTAGTAGGCAACAAGGTAGGTGGGTCTAGATGAATCAACAATAATATCGTCAAGCACACAAGATTTGGAGAATGGAGAGTATAACCGTTGCGGTAA
ATTCCAGGCGTATCACTTCACAGTATAGGCGGGCGCTACACGGCACACAGCGAGAGCGCTAAGAAATTAGAAATCCAAGAATACTGCCACGATTTTAGTT
CCAACTGCTCGGAATCAGCCAACGATATCCAGACAGCGGAGATTTAGCTCCAACCAAGAGGAATCAGCTAACTACACCTAGACAGACGAACAGGACCAAC
AGCAATCGAGCCTCAAATCGGCAGATCTACACAGTAATCGAGGCATACTCGAGACAACAGCAATCGATCAACAATAAATAGTACAACCGTCCGCAGATCT
GCTCCAAACTACTAAGGCCCTGCTTGTTTCGCTGGAAATTAGTCCGATACCCCCGTTTTAGTCGGCCCCGGTTAGTTTTCGGCCCGAGCCCAGTATCGCT
ACTTGGTTCGCTGGTTTTTTTCCGTCTCCGAATCGATTCCGTCCCAATTACACGCGTAACTATCACGGACCTGCGGGGTCCGACCCAAAACGACACCCTT
CCCAAACCTAGCGCGGCGGCGACTGGCTACTGAAACGGAGCAGATGCTGTGCACCTGCTGATGCTGGGTACTGAAACGGAGCAGATGCTGGGTACTGAAA
CGGAGCACCTCCGTATACTCCTGTGCACCTGCAGATACCCCTGTGAGTGAGACGGAGCAGTAACTCAGACTGCCCTCCCAACCGGGGCCTAAGCGATCGA
GCGGAATCAACAGGAATCGATCTACGATACGGCTGAACACGAACAAGAGGAAAAGGGCGGGGCGATCGGGAACTAGCGTACCTTGAGGAGGAGGACGGGA
GCGCCTTCGCTTCGATTGTTCGGCGAGATCGGGGAGGGGACTGGAT