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Detailed information on CNT30242955


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677703Avena sativaSetaria viridis22.0857.5498.54206forward
CNT30640799Avena sativaNymphaea colorata39.9849.0185.25373forward
CNT30550200Avena sativaIpomoea triloba33.4459.6698.08312forward
CNT30490123Avena sativaOlea europaea33.4417.9298.08312forward
CNT30712870Avena sativaGlycine max33.4418.7797.12312forward
CNT30299904Avena sativaTriticum aestivum100.3266.2498.61936forward
CNT30221603Avena sativaHordeum vulgare62.2748.2298.45581forward
CNT30592527Avena sativaMusa acuminata17.5849.198.17164forward
CNT30147386Avena sativaMedicago truncatula33.4420.2397.12312forward
CNT3082633Avena sativaBrassica juncea10.6130.0998.9999forward
CNT30600961Avena sativaFraxinus excelsior8.6823.6288.8981forward
CNT30605266Avena sativaGossypium raimondii33.4414.9197.76312forward
CNT30689140Avena sativaTriticum urartu49.8445.1599.14465forward
CNT30364089Avena sativaSorghum bicolor26.4754.4193.12247forward
CNT3038420Avena sativaCucumis melo32.921.598.37307forward
CNT3099908Avena sativaOryza rufipogon29.37100100274forward
CNT30577866Avena sativaOryza barthii26.6915.2999.6249reverse complement
CNT30335929Avena sativaCynara cardunculus8.922.4997.5983forward

Expression of CNT30242955

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MMEKPASSKRRLCCRSAPYGVVQSQQPFWGASIGNTGLMTGWGAQ*

Sequence

>CNT30242955
AAACTTAGCGAACTGAAACATCTGAGTAGCTAAAGGAAGGAAAATCAACCGAGACCCCGTTAGTAGCGGCGAGCGAGAGCGGAACAAGGGTTTTCATCAA
AAGAAATCCGAAGCGGTTTCATTCGATTTGTTGTGGATTGGATGATGGAAAAACCAGCAAGCAGCAAGCGTAGGCTGTGTTGCCGTAGCGCGCCCTACGG
AGTTGTACAAAGTCAGCAACCGTTTTGGGGCGCAAGCATAGGCAACACAGGACTGATGACGGGGTGGGGCGCGCAGTGAACTGGTTTTCTAAAAAGATTG
GAAGATCCGGCCAAAGAAGGTGATAGCCCTGTTCATTCTTTCCCATGGTTCAATCCTTCCCAGTAAAACGCGGCGTGTTCGAATGATGATCGCTTTTACG
CGAGAAAGGGGGACCACCCTCTAAGCCTAAGTATTCCTCAATGACCGATAGCGTACAAGTACCGTGAGGGAAAGGGGGACCACCCTCTAAGCCTAAGTAT
TCCTCAATGACCGATAGCGTACAAGTACCGTGAGGGAAAGGTGAAAAGAACCCCTAATCGGGGAGTGCAATAGAGAACCTGAGATCCGATGCGAACAATC
AGTCGAAGGAGCGGAGCGCGGGCGCACTCACTCTAACGGCGTACCTTTCGCATGATGGGTCAGCGAGGAAATGGGAACAGCGGCTTAAGCCATTAGGTGT
AGGCGCTTTCCAGAGGTGGAAGATTTACGTTCTTCCTATTTGACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGG
AGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTAT
TTCAGTAGAGCGTATGATGTCGATGGCCCGAGG