Detailed information on CNT30242926


BLAST search results

BLAST vs Swiss-Prot:
sp|Q14FE5|CEMA_POPAL, E-value = 3e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30100754Avena sativaOryza rufipogon23.219.0892.74248forward

Expression of CNT30242926

Peptides detected in this lncRNA

>peptide 1 (88 aa)
QSLFQANSQTRCRSSHQRRWTRGSPPQRPLRVATPQAVLTAAPKALPLLRLDWKESPVHSLESTKFSKKSRPISAMYPTINAQFLARA*

>peptide 2 (64 aa)
PIVVPSKLTNALPLLPSAAMDEGIAAPTAATGGDTASSVDGGAQSSSSSSARLEGVPGPQSGIN*

>peptide 3 (34 aa)
MLSPVAAVPRAPAAAAYSDRRRRGVRGSAGRGILT

>peptide 4 (41 aa)
MSRVMYVWFFRQNWVTYCFVTLDAPKYKLCDRLVRFFRCVT*

>peptide 5 (38 aa)
NRCSKQTHKRAAAPPISGDGRGDRRPNGRYGWRHRKQC*

>peptide 6 (60 aa)
MYVQRHLQRSAIQMREKGRPPRAPPDAITSSRGAARASSRRLLRPPPSRGSWECWAGDFDG

>peptide 7 (45 aa)
MTTSEGDRRFKQKKTQNFKHVSRITGKFQTKIVKISSLGAHPRSL*

Sequence

>CNT30242926
CCAATCGTTGTTCCAAGCAAACTCACAAACGCGCTGCCGCTCCTCCCATCAGCGGCGATGGACGAGGGGATCGCCGCCCCAACGGCCGCTACGGGTGGCG
ACACCGCAAGCAGTGTTGACGGCGGCGCCCAAAGCTCTTCCTCTTCTTCGGCTCGATTGGAAGGAGTCCCCGGTCCACAGTCTGGAATCAACTAAATTCA
GTAAAAAATCCAGGCCAATCAGCGCCATGTACCCAACGATCAATGCGCAGTTCCTAGCAAGGGCCTAGCTGAAAATATCTTCCGTCGCGTGTAAAGAAGT
GCTGATTCGTTTCTTGTAATTGTAGATCAGCGGTTTATATATAGAAAAGGGCTTTATTTCTAAAGAAAGATGCTAATTTGATTAATATCAGGAAATGGAA
TGAATTTATGCTTCACTAATTGAATGATAAATGACTACAAGCGAAGGAGATAGGCGGTTTAAACAAAAAAAGACCCAAAATTTCAAACATGTATCTAGAA
TTACTGGAAAATTTCAAACAAAAATTGTGAAAATTAGCTCATTAGGAGCCCATCCAAGATCGTTGTAGACCCAACGAATTAGTAGTTGCCAACCGCGGGT
GGAGTGAAATCCAACAAAAAAAACAGTAACTAAAAGAATAAAAAAAGCTTTTATTGAGAAAAAAATCCATGTCACGTGTGATGTATGTGTGGTTTTTTCG
ACAAAACTGGGTGACATACTGTTTTGTGACCTTAGATGCACCAAAATACAAGTTGTGTGACCGGTTAGTCCGGTTTTTTAGATGTGTGACTTAAGTGCAC
ACGCGGAGCAAGTTTAGTGACCGCTAGTGTCATTTATTCTTCACCTCTCACCTGTAAGCCCCGAGGCTGGGGATTCAGGAACTCACATGTACGTTCAGCG
CCATCTCCAGCGGTCGGCCATTCAGATGCGGGAGAAGGGCCGCCCGCCGCGGGCTCCTCCGGATGCTATCACCAGTAGCCGCGGTGCCGCGCGCGCCAGC
AGCCGCCGCCTACTCCGACCGCCGCCGTCGCGGGGTTCGTGGGAGTGCTGGGCGGGGGATTTTGACGGG