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Detailed information on CNT30242874


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 6e-102

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3067610Avena sativaLeersia perrieri64.3626.1991.85466forward

Expression of CNT30242874

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICICKYKA*

>peptide 2 (50 aa)
PMHRELLEQEHSSKEIIRHTDFDTKLRVHLFIHHDSSKAASPQQKFVGTE*

>peptide 3 (53 aa)
MPSLSWIFAFTLSMVSDDSTSRVMVLPVRVLTKICMPPRSLSTRWRVDSFWML*

Sequence

>CNT30242874
GACCAATGCATCGGGAACTATTAGAACAAGAACACAGCAGCAAAGAGATAATCAGACACACAGATTTTGACACTAAGTTGAGGGTTCACTTATTCATTCA
TCACGATTCATCCAAAGCTGCTTCACCACAGCAGAAGTTTGTAGGCACAGAATAAAGTCACACTAACAAGGCAGGACCAAATACACTACCAGACGACACA
CCGAAGAGACCAGACTTGTGAACCCAGAGACAGAACCAGCTCCTTACTGCCCACCACGGAGGCGAAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTT
GTAGTCCGCCAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTC
ACATTGTCAATGGTATCTGATGACTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATGCCTCCACGGAGCCTGAGCACCA
GGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGGAT
GCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATC
TGCATCTGTAAATACAAAGCATAG