Detailed information on CNT30242864


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 3e-158

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30576634Avena sativaOryza barthii72.7764.7791.51695forward

Expression of CNT30242864

Peptides detected in this lncRNA

>peptide 1 (77 aa)
EQEHSSKEICRHKDLTLKFRVHLFIHHGSSRLLHRSRSLQDTGTSHLTTIRQEQIHDQTKRGHTDSSTGAYRRPPDL*

>peptide 2 (61 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICMPPRRRRTRWRVDSFWML*

>peptide 3 (53 aa)
MPSLSWIFALTLSMVSEDSTSRVMVLPVRVLTKICMPPRSLSTRWRVDSFWML*

>peptide 4 (45 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICICK

Sequence

>CNT30242864
TAGAACAAGAACACAGCAGCAAAGAGATATGCAGACACAAGGATTTGACTCTTAAGTTCAGGGTTCACTTATTCATTCATCACGGTTCATCAAGGCTGCT
GCATCGCAGCAGAAGTTTGCAAGACACAGGTACATCACACTTGACGACAATACGACAGGAACAAATACACGACCAGACCAAACGAGGACACACCGACAGC
TCAACTGGAGCATACCGAAGACCACCAGACTTGTGAACCCAGAGACAGAAGCAGCCCCTTACTGGCCACCACGAAGACGGAGCACCAAGTGAAGGGTGGA
CTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCGTCCTCTAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCC
TGGATCTTCGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCATGCCACCAC
GGAGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGGCGCTG
CTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGG
GTCTTCACGAAGATCTGCATGCCTCCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGGCCGTCCTCTA
GCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGGACTCCAC
CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATCTGTAAA