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Detailed information on CNT30242826


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693916Avena sativaOryza sativa72.0860.3588.24901forward
CNT30528977Avena sativaEucalyptus grandis73.0468.1389.92913forward
CNT30192628Avena sativaSecale cereale73.4474.7692.37918forward
CNT30305252Avena sativaTriticum aestivum62.4891.4591.42781forward
CNT30226205Avena sativaHordeum vulgare73.0488.4790.8913forward
CNT30553671Avena sativaOryza glaberrima73.2878.7687.23916forward
CNT30141687Avena sativaLolium perenne73.6879.5393.49921forward
CNT30228911Avena sativaAnanas comosus73.1258.788.07914forward
CNT30716337Avena sativaMalus domestica golden72.8873.5388.04911forward
CNT30368741Avena sativaSorghum bicolor73.4478.686.93918forward
CNT30110940Avena sativaOryza longistaminata72.0833.2288.35901forward
CNT30321313Avena sativaAsparagus officinalis68.0864.9187.07851forward
CNT30116770Avena sativaOryza nivara72.0864.4588.24901forward

Expression of CNT30242826

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MDWSTPKTTRLVNPETDATPYWPPRRRSTK*

>peptide 2 (68 aa)
MQLLTGHHGDGAPSEGWTPSGCCSPPGCGHPQAACQRRSDAAGPGGCPPCPGSWPSHCQWCLMTPPPG*

>peptide 3 (62 aa)
TRHQCKKYKNPKEQDTKNQCILEQEHSSKEICRHKDLTLKFRVHLFIHHGSSRLLHHRCRSL*

>peptide 4 (53 aa)
MPSLSWILAFTLSMVSDDSTSRVMVLPVRVLTKICMPPRRRSTRWRVDSFWML*

>peptide 5 (53 aa)
MPSLSWIFAFTLSMVSDDSTSRVMVLPVRVLTKICMPPRSLSTRWRVDSFWML*

>peptide 6 (52 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICMPPRRRRTR*

>peptide 7 (43 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICI

>peptide 8 (30 aa)
MQKFVRHMYITLDHNTAGTNTRRDQTRAHR*

Sequence

>CNT30242826
ACGAGACACCAATGCAAGAAATATAAAAATCCAAAAGAACAAGATACTAAAAACCAATGCATATTAGAACAAGAACACAGCAGCAAAGAGATATGCAGAC
ACAAGGATTTGACTCTTAAGTTCAGGGTTCACTTATTCATTCATCACGGTTCATCAAGGTTGCTGCATCACAGATGCAGAAGTTTGTAAGACACATGTAC
ATCACACTTGACCACAATACGGCAGGAACAAATACACGACGAGACCAAACGAGGGCACACCGATAGCTCCAATGGACTGGAGCACACCGAAGACCACCAG
ACTAGTAAACCCAGAGACAGATGCAACTCCTTACTGGCCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGG
GTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGG
TGTCTGATGACTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCATGCCACCACGGAGACGGAGCACAAGGTGGAGGGTGGA
CTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCC
TGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATGCCTCCAC
GGAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAGACGCTG
CTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCAATGGTATCTGATGACTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGG
GTCTTGACAAAGATCTGCATGCCTCCACGGAGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGGCCGTCCTCTA
GCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGGACTCCAC
CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATCT