Detailed information on CNT30242786


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524649Avena sativaSetaria italica98.1525.7999.53850forward
CNT3046714Avena sativaPrunus dulcis22.9893.4386.93199reverse complement
CNT30157603Avena sativaPistacia vera68.9462.5890.62597forward
CNT3092080Avena sativaSolanum tuberosum32.4548.293.95281forward
CNT30185187Avena sativaSecale cereale100.4624.698.51870forward
CNT30299935Avena sativaTriticum aestivum100.4639.6598.51870forward
CNT30223648Avena sativaHordeum vulgare100.2336.5595.39868forward
CNT30387090Avena sativaTriticum turgidum100.4630.9298.62870forward
CNT30543278Avena sativaBrassica napus66.5121.3394.44576forward
CNT30439575Avena sativaAegilops tauschii100.4661.798.74870reverse complement
CNT30670388Avena sativaTriticum dicoccoides10030.8898.04866forward
CNT30140120Avena sativaLolium perenne100.1226.1199.54867forward
CNT3017956Avena sativaZea mays100.6924.7297.13872forward
CNT30655407Avena sativaRosa chinensis68.1317.6593.56590forward
CNT30688988Avena sativaTriticum urartu89.8440.0298.59778forward
CNT30721940Avena sativaTriticum spelta100.4675.1398.51870forward
CNT3057903Avena sativaAmborella trichopoda67.0924.2592.08581reverse complement
CNT30108930Avena sativaOryza longistaminata100.1237.0599.54867forward
CNT30331546Avena sativaDioscorea rotundata48.27100.2494.02418reverse complement
CNT30499372Avena sativaDigitaria exilis100.1225.5199.54867forward
CNT30603680Avena sativaOryza punctata100.1221.9799.54867forward
CNT30113381Avena sativaFicus carica23.2145.0796.02201reverse complement

Expression of CNT30242786

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MMEKPASSKRRLCCRSAPYGVVQSQQPFWGASIGNTGLMTGWGAQ*

Sequence

>CNT30242786
AAACTTAGCGAACTGAAACATCTGAGTAGCTAAAGGAAGGAAAATCAACCGAGACCCCGTTAGTAGCGGCGAGCGAGAGCGGAACAAGGGTTTTCATCAA
AAGAAATCCGAAGCGGTTTCATTCGATTTGTTGTGGATTGGATGATGGAAAAACCAGCAAGCAGCAAGCGTAGGCTGTGTTGCCGTAGCGCGCCCTACGG
AGTTGTACAAAGTCAGCAACCGTTTTGGGGCGCAAGCATAGGCAACACAGGACTGATGACGGGGTGGGGCGCGCAGTGAACTGGTTTTCTAAAAAGATTG
GAAGATCCGGCCAAAGAAGGTGATAGCCCTGTTCATTCTTTCCCATGGTTCAATCCTTCCCAGTAAAACGCGGCGTGTTCGAATGATGATCGCTTTTACG
CGAGAAAGGGGGACCACCCTCTAAGCCTAAGTATTCCTCAATGACCGATAGCGTACAATACCGTGAGGGAAAGGTGAAAAGAACCCCTAATCGGGGAGTG
CAATAGAGAACCTGAGATCCGATGCGAACAATCAGTCGAAGGAGCGGAGCGCGGGCGCACTCACTCTAACGGCGTACCTTTCGCATGATGGGTCAGCGAG
GAAATGGGAACAGCGGCTTAAGCCATTAGGTGTAGGCGCTTTCCAGAGGTGGAAGATTTACGTTCTTCCTATTTGACCCGAAACCGATCGATCTAGCCAT
GAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAA
GATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGTATGATGTCGATGGCCCGAGG