Detailed information on CNT30242670


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 1e-157

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30306465Avena sativaTriticum aestivum74.6875.9993.48690forward

Expression of CNT30242670

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MQLLTGHHGDGAPSEGWTPSGCCSPPGCGRPLAAYQQRSDAAGPEGCPPCPGSSP*

>peptide 2 (53 aa)
MPSLSWIFALTLSMVSEDSTSRVMVLPVRVLTKICMPPRSLSTRWRVDSFWML*

>peptide 3 (61 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICMPPRRRRTRWRVDSFWML*

>peptide 4 (42 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKIC

>peptide 5 (30 aa)
RHKDLTLKFRVHLFIHHGSSRLLHHRCRSL*

>peptide 6 (30 aa)
MDWSTPKTTRLVNPETDATPYWPPRRRSTK*

>peptide 7 (30 aa)
MQKFVRHMYITLDHNTAGTNTRRDQTRAHR*

Sequence

>CNT30242670
CAGACACAAGGATTTGACTCTTAAGTTCAGGGTTCACTTATTCATTCATCACGGTTCATCAAGGTTGCTGCATCACAGATGCAGAAGTTTGTAAGACACA
TGTACATCACACTTGACCACAATACGGCAGGAACAAATACACGACGAGACCAAACGAGGGCACACCGATAGCTCCAATGGACTGGAGCACACCGAAGACC
ACCAGACTAGTAAACCCAGAGACAGATGCAACTCCTTACTGGCCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCG
CCAGGGTGCGGCCGTCCTCTAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTC
GATGGTGTCGGAAGACTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCATGCCACCACGGAGCCTGAGCACCAGGTGGAGG
GTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCT
TGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATGCC
TCCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCAAAGATGAGG
CGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCGG
TGAGGGTCTTCACAAAGATCTGCA