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Detailed information on CNT30242602


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674319Avena sativaSetaria viridis71.5782.0591.44818forward
CNT3044330Avena sativaPrunus dulcis79.2774.0886.2906forward
CNT30191529Avena sativaSecale cereale80.4953.1592.17920forward
CNT30461176Avena sativaSaccharum spontaneum80.5827.0289.79921forward
CNT307928Avena sativaZea mays80.5877.2788.6921forward
CNT30229606Avena sativaAnanas comosus80.3169.2888.24918forward
CNT30652285Avena sativaRosa chinensis79.8875.0286.53913forward
CNT30689817Avena sativaTriticum urartu80.5856.2393.49921forward
CNT30722465Avena sativaTriticum spelta72.7973.6991.11832forward
CNT30338865Avena sativaEragrostis tef80.1473.9387.01916forward
CNT30368619Avena sativaSorghum bicolor79.5378.7787.24909forward
CNT30595796Avena sativaOryza meridionalis80.2370.8790.29917forward
CNT30704857Avena sativaPrunus avium79.8857.8286.86913forward
CNT30593897Avena sativaEragrostis curvula80.481.8390.97919forward

Expression of CNT30242602

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICI

>peptide 2 (44 aa)
MPSLSWILAFTLSMVSDDSTSRVMVLPVRVLTKICMPPRRRSTR*

>peptide 3 (30 aa)
MDWSTPKTTRLVNPETDATPYWPPRRRSTK*

>peptide 4 (30 aa)
MQKFVRHMYITLDHNTAGTNTRRDQTRAHR*

>peptide 5 (68 aa)
MQLLTGHHGDGAPSEGWTPSGCCSPPGCGHPQAACQRRSDAAGPGGCPPCPGSWPSHCQWCLMTPPPG*

>peptide 6 (61 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICMPPRRRRTRWRVDSFWML*

>peptide 7 (53 aa)
MPSLSWIFALTLSMVSEDSTSRVMVLPVRVLTKICMPPRSLSTRWRVDSFWML*

Sequence

>CNT30242602
TTTGACTCTTAAGTTCAGGGTTCACTTATTCATTCATCACGGTTCATCAAGGTTGCTGCATCACAGATGCAGAAGTTTGTAAGACACATGTACATCACAC
TTGACCACAATACGGCAGGAACAAATACACGACGAGACCAAACGAGGGCACACCGATAGCTCCAATGGACTGGAGCACACCGAAGACCACCAGACTAGTA
AACCCAGAGACAGATGCAACTCCTTACTGGCCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGC
CATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCTGA
TGACTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCATGCCACCACGGAGACGGAGCACAAGGTGAAGGGTGGACTCCTTC
TGGATGTTGTAGTCCGCCAGGGTGCGGCCGTCCTCTAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCT
TCGCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCATGCCACCACGGAGCCT
GAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCC
GGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCA
CGAAGATCTGCATGCCTCCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGGCCGTCCTCTAGCTGCTT
GCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGGACTCCACCTCGAGG
GTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATCT