Detailed information on CNT30242486


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 8e-158

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30398794Avena sativaTriticum turgidum53.6468.1991.5553forward
CNT30142093Avena sativaLolium perenne67.873.1294.13699forward
CNT30583334Avena sativaEchinochloa crusgalli67.3132.2891.35694forward
CNT30593848Avena sativaEragrostis curvula67.0277.4792.62691forward

Expression of CNT30242486

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MPSLSWIFAFTLSMVSDDSTSRVMVLPVRVLTKICMPPRSLSTRWRVDSFWML*

>peptide 2 (99 aa)
TRHQCKKYKNPKEQDTKNQCILEQEHSSKEICRHKDLTLKFRVHLFIHHGSSRLLHRSRSLQDTGTSHLTTIRQEQIHDQTKRGHTDSSTGAYRRPPDL*

>peptide 3 (44 aa)
MPSLSWIFAFTLSMVSDDSTSRVMVLPVRVLTKICMPPRRRSTR*

>peptide 4 (49 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICICKYKA*

Sequence

>CNT30242486
ACGAGACACCAATGCAAGAAATATAAAAATCCAAAAGAACAAGATACTAAAAACCAATGCATATTAGAACAAGAACACAGCAGCAAAGAGATATGCAGAC
ACAAGGATTTGACTCTTAAGTTCAGGGTTCACTTATTCATTCATCACGGTTCATCAAGGCTGCTGCATCGCAGCAGAAGTTTGCAAGACACAGGTACATC
ACACTTGACGACAATACGACAGGAACAAATACACGACCAGACCAAACGAGGACACACCGACAGCTCAACTGGAGCATACCGAAGACCACCAGACTTGTGA
ACCCAGAGACAGAAGCAGCCCCTTACTGGCCACCACGAAGACGGAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCC
ATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCTGAT
GACTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATGCCACCACGGAGACGTAGCACAAGGTGAAGGGTGGACTCCTTCT
GGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT
CGCCTTCACATTGTCAATGGTATCTGATGACTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATGCCTCCACGGAGCCTG
AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCG
GGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCAC
AAAGATCTGCATCTGTAAATACAAAGCATAG