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Detailed information on CNT30242438


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 2e-158

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691368Avena sativaOryza sativa74.5231.7691.34693forward
CNT30528694Avena sativaEucalyptus grandis74.0962.5289.99689forward
CNT30669573Avena sativaTriticum dicoccoides74.8470.9592.67696forward
CNT30141474Avena sativaLolium perenne75.3876.2894.44701forward
CNT308249Avena sativaZea mays72.6976.4790.09676forward
CNT30229481Avena sativaAnanas comosus74.0964.7689.11689forward
CNT30595771Avena sativaOryza meridionalis74.5265.5691.92693forward
CNT30100520Avena sativaOryza rufipogon74.0969.4691689forward

Expression of CNT30242438

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MQLLTGHHGDGAPSEGWTPSGCCSPPGCGHPQAACQRRSDAAGPGGCPPCPGSWPSHCQWCLMTPPPG*

>peptide 2 (48 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICICKYKA

>peptide 3 (53 aa)
MPSLSWILAFTLSMVSDDSTSRVMVLPVRVLTKICMPPRRRSTRWRVDSFWML*

>peptide 4 (61 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICMPPRRRRTRWRVDSFWML*

>peptide 5 (30 aa)
MQKFVRHMYITLDHNTAGTNTRRDQTRAHR*

>peptide 6 (30 aa)
MDWSTPKTTRLVNPETDATPYWPPRRRSTK*

Sequence

>CNT30242438
TTTGACTCTTAAGTTCAGGGTTCACTTATTCATTCATCACGGTTCATCAAGGTTGCTGCATCACAGATGCAGAAGTTTGTAAGACACATGTACATCACAC
TTGACCACAATACGGCAGGAACAAATACACGACGAGACCAAACGAGGGCACACCGATAGCTCCAATGGACTGGAGCACACCGAAGACCACCAGACTAGTA
AACCCAGAGACAGATGCAACTCCTTACTGGCCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGC
CATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCTGA
TGACTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCATGCCACCACGGAGACGGAGCACAAGGTGGAGGGTGGACTCCTTC
TGGATGTTGTAGTCAGCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCT
TGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATGCCTCCACGGAGACG
GAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCC
GGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCA
CAAAGATCTGCATCTGTAAATACAAAGCAT