Detailed information on CNT30242436


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 2e-159

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30519947Avena sativaSetaria italica89.9678.188.84681forward
CNT30722025Avena sativaTriticum spelta88.2475.492.22668forward

Expression of CNT30242436

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICMPPRRRRTRWRVDSFWML*

>peptide 2 (68 aa)
MQLLTGHHGDGAPSEGWTPSGCCSPPGCGHPQAACQRRSDAAGPGGCPPCPGSWPSHCQWCLMTPPPG*

>peptide 3 (74 aa)
HTEDHQTSKPRDRCNSLLATTETEHQVKGGLLLDVVVRQGAAILKLLASEDQTLLVRGDALLVLDLGLHIVNGV*

>peptide 4 (49 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICICKYKA*

>peptide 5 (53 aa)
MPSLSWILAFTLSMVSDDSTSRVMVLPVRVLTKICMPPRRRSTRCSVDSFWML*

Sequence

>CNT30242436
CACACCGAAGACCACCAGACTAGTAAACCCAGAGACAGATGCAACTCCTTACTGGCCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGG
ATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGG
CCTTCACATTGTCAATGGTGTCTGATGACTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCATGCCACCACGGAGACGGAG
CACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGA
GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGA
AGATCTGCATGCCTCCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGGCCGTCCTCTAGCTGCTTGCC
AGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGGACTCCACCTCGAGGGTG
ATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATCTGTAAATACAAAGCATAG