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Detailed information on CNT30242408


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 8e-102

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30398809Avena sativaTriticum turgidum63.635.7494.68470forward
CNT30668444Avena sativaTriticum dicoccoides64.0167.9694.29473forward
CNT30688478Avena sativaTriticum urartu64.8225.8194.78479forward
CNT30723091Avena sativaTriticum spelta64.8263.4494.78479forward
CNT30583294Avena sativaEchinochloa crusgalli63.0624.4992.06466forward

Expression of CNT30242408

Peptides detected in this lncRNA

>peptide 1 (77 aa)
EQEHSSKEICRHKDLTLKFRVHLFIHHGSSRLLHRSRSLQDTGTSHLTTIRQEQIHDQTKRGHTDSSTGAYRRPPDL*

>peptide 2 (49 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICICKYKA*

>peptide 3 (53 aa)
MPSLSWIFAFTLSMVSDDSTSRVMVLPVRVLTKICMPPRSLSTRWRVDSFWML*

Sequence

>CNT30242408
TAGAACAAGAACACAGCAGCAAAGAGATATGCAGACACAAGGATTTGACTCTTAAGTTCAGGGTTCACTTATTCATTCATCACGGTTCATCAAGGCTGCT
GCATCGCAGCAGAAGTTTGCAAGACACAGGTACATCACACTTGACGACAATACGACAGGAACAAATACACGACCAGACCAAACGAGGACACACCGACAGC
TCAACTGGAGCATACCGAAGACCACCAGACTTGTGAACCCAGAGACAGAAGCAGCCCCTTACTGGCCACCACGAAGACGGAGCACCAAGTGAAGGGTGGA
CTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC
TGGATCTTCGCCTTCACATTGTCAATGGTATCTGATGACTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATGCCTCCAC
GGAGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCAAAGATGAGGCGCTG
CTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGG
GTCTTCACAAAGATCTGCATCTGTAAATACAAAGCATAG