Detailed information on CNT30242302


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 8e-158

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672296Avena sativaSetaria viridis67.1285.2291.33692forward
CNT30141487Avena sativaLolium perenne67.9976.2894.44701forward
CNT30230519Avena sativaAnanas comosus67.2269.7988.89693forward
CNT30722254Avena sativaTriticum spelta63.3499.6992.19653forward
CNT30364163Avena sativaSorghum bicolor67.3175.689.48694forward

Expression of CNT30242302

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MPSLSWIFAFTLSMVSDDSTSRVMVLPVRVLTKICMPPRRRSTRWRVDSFWML*

>peptide 2 (61 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICMPPRRRRTRWRVDSFWML*

>peptide 3 (49 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICICKYKA*

>peptide 4 (99 aa)
TRHQCKKYKNPKEQDTKNQCILEQEHSSKEICRHKDLTLKFRVHLFIHHGSSRLLHRSRSLQDTGTSHLTTIRQEQIHDQTKRGHTDSSTGAYRRPPDL*

Sequence

>CNT30242302
ACGAGACACCAATGCAAGAAATATAAAAATCCAAAAGAACAAGATACTAAAAACCAATGCATATTAGAACAAGAACACAGCAGCAAAGAGATATGCAGAC
ACAAGGATTTGACTCTTAAGTTCAGGGTTCACTTATTCATTCATCACGGTTCATCAAGGCTGCTGCATCGCAGCAGAAGTTTGCAAGACACAGGTACATC
ACACTTGACGACAATACGACAGGAACAAATACACGACCAGACCAAACGAGGACACACCGACAGCTCAACTGGAGCATACCGAAGACCACCAGACTTGTGA
ACCCAGAGACAGAAGCAGCCCCTTACTGGCCACCACGAAGACGGAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCC
ATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCTGAT
GACTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATGCCACCACGGAGACGTAGCACAAGGTGGAGGGTGGACTCCTTCT
GGATGTTGTAGTCAGCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTT
GGCCTTGACGTTGTCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATGCCTCCACGGAGACGG
AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCG
GGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCAC
AAAGATCTGCATCTGTAAATACAAAGCATAG