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Detailed information on CNT3024212


BLAST search results

BLAST vs Swiss-Prot:
sp|P93604|LRK10_WHEAT, E-value = 4e-65

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30314958Populus trichocarpaCorylus avellana76.0329.579.88482forward
CNT30515782Populus trichocarpaJuglans regia22.8711.3986.21145forward
CNT30701990Populus trichocarpaQuercus lobata54.158.7386.3343forward
CNT30501297Populus trichocarpaCoffea canephora20.8231.8181.06132forward
CNT30710978Populus trichocarpaGlycine max11.0425.6488.5770forward
CNT30171019Populus trichocarpaTrifolium pratense21.1439.4181.34134forward
CNT30129040Populus trichocarpaCorymbia citriodora11.6720.0586.4974forward
CNT30109318Populus trichocarpaOryza longistaminata9.6223.5588.5261forward
CNT30318671Populus trichocarpaAsparagus officinalis14.5124.683.792forward

Expression of CNT3024212

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSYLLNLRVRVPYKREIMIMTLQEFFYVTKH*

>peptide 2 (36 aa)
MVATSLINSCPLAFSLRKIFTAAKRPLRSFPLYTEP*

>peptide 3 (46 aa)
MVNSSNGGNFIDKFLPISFFFAQNFYSRKTTTTKLSFVHRAITSFT*

>peptide 4 (74 aa)
MSKCKICMSQPSCRYSMPRATPREISYIFWLLNGMLPCLEKIYFSRDPLGMNSYIRARFEPSTVKPMSCTTLQW*

Sequence

>CNT3024212
AATTTTGCAAGTCCAAAATCTGAGACTTTTGGAGTGAAATTTTCATCGAGAAGAATGTTGTGAGGCTTGATGTCAAAATGCAAAATCTGCATGTCACAAC
CTTCATGTAGATATTCAATGCCACGAGCCACCCCTAGAGAAATTTCATATATTTTCTGGTTACTCAACGGTATGCTTCCTTGCCTAGAAAAAATATATTT
TTCAAGAGATCCATTAGGCATGAACTCATATATAAGGGCACGCTTTGAGCCCTCAACAGTAAAGCCTATGAGCTGCACCACATTGCAATGGTGAATTCTT
CCAATGGTGGCAACTTCATTGATAAATTCTTGCCCATTAGCTTTTTCTTTGCGCAAAATTTTTACAGCCGCAAAACGACCACTACGAAGCTTTCCTTTGT
ACACCGAGCCATAACCTCCTTCACCTAACTTGTCATTGAATCCATGAGTTATCTTCTTAATCTCCGAGTAAGAGTACCTTATAAGCGTGAGATTATGATC
ATGACTTTGCAAGAATTCTTCTATGTTACCAAACATTGATAAATGCCTTCTTCGCCATGTATAGACCAATAAGGTTATGAGACATGGAAACCCACAAATG
AATAATAATATATGATATATCCCTGCATATAGAC