Detailed information on CNT30242017


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30285390Avena sativaTriticum aestivum15.9420.8196.177forward
CNT30679781Avena sativaTriticum urartu33.9524.4492.68164forward
CNT30368187Avena sativaSorghum bicolor12.4224.4996.6760forward

Expression of CNT30242017

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MVQEGQKRRESLIQQAFRSCRVGPGWAAAGAPS*

>peptide 2 (46 aa)
MELPERPFTATGWAATRDAIATCEQRTLSSSSSSSEDDALAGTSVHR

Sequence

>CNT30242017
TGAAGCTATCATCCATTCAATTACTGATACACATAGTACAGGAATCAGATAGTATCAACAACGCATACAGATAAGGGGGGATCGGTATCGGATCCATGGT
ACAAGAAGGGCAGAAAAGGAGGGAGAGCCTGATCCAACAAGCTTTTAGATCTTGCCGCGTGGGCCCGGGGTGGGCGGCAGCTGGGGCCCCTTCTTGATGG
GGAGCAGGTCCGGTGAGGCGCTGGCGGAGACGTAGGCGAGCAGGGAGCCGCCGCCGAGGAGCAGGAACTTGAGCAGGAGCCCCCGCTTGGTGAAGGGCGC
GGCGAAGGAGGAGGGCCGGACGGCGAGCTTGCGGCCGGAGATGGAGCTGCCGGAGAGGCCCTTCACGGCCACGGGCTGGGCGGCGACGAGGGACGCCATT
GCTACCTGCGAGCAGCGCACTCTTTCTTCTTCTTCCTCTTCTTCTGAAGACGATGCTCTGGCGGGTACGTCCGTGCACAGAAT