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Detailed information on CNT30241998


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG86|RS271_HORVU, E-value = 6e-78

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30178164Avena sativaSecale cereale26.1430.6298.07207forward
CNT30285265Avena sativaTriticum aestivum29.2930.8596.55232forward
CNT30220676Avena sativaHordeum vulgare29.2941.2198.28232forward
CNT30435195Avena sativaAegilops tauschii29.2940.0797.41232forward
CNT30456592Avena sativaSaccharum spontaneum27.426.494.93217forward
CNT30130551Avena sativaLolium perenne29.2934.0797.84232forward
CNT3067544Avena sativaLeersia perrieri27.413.1998.16217forward
CNT30720110Avena sativaTriticum spelta29.2936.7197.84232forward
CNT30341903Avena sativaEragrostis tef29.2927.4996.98232forward
CNT30368046Avena sativaSorghum bicolor29.2938.0396.12232forward
CNT30369422Avena sativaOryza glumipatula29.2917.7493.97232forward
CNT30576569Avena sativaOryza barthii29.2919.1796.12232forward
CNT30582668Avena sativaEchinochloa crusgalli27.437.4197.7217forward
CNT30499448Avena sativaDigitaria exilis29.1730.695.67231forward
CNT30116662Avena sativaOryza nivara29.2910.2796.12232forward
CNT30594254Avena sativaEragrostis curvula29.2927.9997.41232forward

Expression of CNT30241998

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MRRCWSGGMPSLSWILAFTLSMVSEDSTSSVMVLPVRVFTKICILAAVGGRLRALRRRRWWRRRGRVWVGWRSE

Sequence

>CNT30241998
GTAATATGAAAATAATACTGTAATCCAGAATTGATAGCATATAACTGAATCCAAAATTTAAACTCGCATGGCATCATCTGAGTAATAGACGAACAAATAT
CCAGGAAACATACTACTTCAGGTTCAGTTTTAACGACAAACGGTAGACATATCTAAATGAGATGTAACCAACAGCTCAATTGAGTTCTCGATAGGTAGGG
TAAAGTAAAGCATAGCGAACGCTGGGCCACCTCTAAGCCTTCTGGTTGTAGACGTAGGTGAGGCCGCACTTGCCGCAGTAGTGGCGGTCGAAGTGGTTGG
CCATGAATGTCCCGGCGCCGCACTCGGCGTTGGGGCACTCCTTCCTGAGCCTGGTGACCTTGCCGGTGGCGTCGTCGACCTTGTAGAACTGGAGGAGGGC
GAGCTTCACCTTCTTGTGCTTGTGCTTTTGCTTCTTGGGCTTGGTGTACGTCTTCTTCTTGCGCTTCTTGGCGCCTCCGCGAAGACGGAGCACCAGGTGG
AGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCT
CCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT
CTTGGCGGCGGTGGGGGGTCGCCTCCGCGCGCTGCGGCGGCGACGCTGGTGGCGGCGGCGGGGTAGGGTTTGGGTTGGGTGGAGGAGTGAAG