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Detailed information on CNT3024196


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672571Populus trichocarpaSetaria viridis20.2621.988.0492forward
CNT30512691Populus trichocarpaJuglans regia22.256.2287.13101forward
CNT30393881Populus trichocarpaTriticum turgidum19.8222.3388.8990forward
CNT30587002Populus trichocarpaMusa acuminata34.3657.7883.97156forward
CNT30511330Populus trichocarpaSolanum lycopersicum50.6656.3787.39230forward
CNT30555589Populus trichocarpaOryza glaberrima49.1212.7883.86223forward
CNT30440426Populus trichocarpaAegilops tauschii22.0321.3290100forward
CNT30652852Populus trichocarpaRosa chinensis43.3949.590.86197forward
CNT30624277Populus trichocarpaDaucus carota38.7736.9788.64176forward
CNT30721746Populus trichocarpaTriticum spelta49.1213.8785.65223forward
CNT30367313Populus trichocarpaSorghum bicolor20.2616.289.1392forward
CNT30596728Populus trichocarpaOryza meridionalis22.0320.6284100forward
CNT30371441Populus trichocarpaOryza glumipatula22.0324.5185100forward
CNT30646445Populus trichocarpaCannabis sativa44.7158.8484.24203forward
CNT3054135Populus trichocarpaAmborella trichopoda48.6836.4188.69221forward
CNT30322486Populus trichocarpaAsparagus officinalis49.1247.5585.65223forward
CNT30150825Populus trichocarpaBrachypodium distachyon42.2932.4386.98192forward
CNT30104395Populus trichocarpaOryza rufipogon42.0738.6682.72191forward
CNT30578506Populus trichocarpaOryza barthii22.036.2985100forward
CNT30117442Populus trichocarpaOryza nivara22.0324.5785100forward
CNT30725998Populus trichocarpaLupinus angustifolius20.744.7691.4994forward

Expression of CNT3024196

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MTYMLMVTTTMRMLNRIHSHTTHLRPAVPLHSELVV

Sequence

>CNT3024196
TGAGATAATACAGATTTGGAATGCATTCACGCAAGGCAGAGATAATTGAAAATCCAACTAGAGCACGAATTCAAAAATATCTATTATCTTAAAACAGTCA
AAAACAAAAGACGTCGGATACTTGAATATCCAAACAAAACTTTCATTAGAAACATCCCAGTAAGTGCTGAAATAATCTAACAGGCAGTGACAATAACCAA
AAACAATGACGCAAATGAAAATCATTAAACCTTGTCAGCCTTGGCGGCAGAGGCAGCAGCCTGTCCTCTAAGACGACCAGTTCTCCTAGCAGCAATGAGA
CCAACCTTTTGACCAGGAGGAGCATCACGCCTGACTGTGCTAGCATGACCTATATGTTGATGGTTACCACCACCATGAGGATGCTCAACAGGATTCATAG
CCACACCACGCACCTTAGGCCAGCAGTTCCTCTTCACTCTGAACTTGTGGTAAG