CANTATAdb - search

Detailed information on CNT30241870

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30690383	Avena sativa	Oryza sativa	20.85	12.39	89.16	83	forward
CNT30552437	Avena sativa	Oryza glaberrima	20.85	19.67	89.16	83	forward
CNT30369401	Avena sativa	Oryza glumipatula	20.85	18.82	89.16	83	forward
CNT3099956	Avena sativa	Oryza rufipogon	20.85	7.74	89.16	83	forward
CNT30115687	Avena sativa	Oryza nivara	20.85	18.69	89.16	83	forward

Expression of CNT30241870

Sequence

>CNT30241870
CAAAGTTGAGGCGCATATATTAGAGGCATGAGGGAGAACAAGGATCGATCGGTCGGTCGATCATGGCGACACACACGCGTACAGAATTAAGGGACGAACA
GGGCGGTCTTTATTTTATTTAGCAGCAGCTAGCTAGTGACACGCTTGCTGCGCGGCGGCGGCGGTGGTGGTGGCGGGTGGTGGTCCTCCTCGTCCTCATA
CTCGCCAGCCGGCCGTACGCCGGCGGCGGGGTCCTCACTTGCAGTTGCAGCAGGAGCAGCCGCAGGCGGTACCGCACTTGCAGCCGGCGCCGCACCCGCA
CTTGCCGCCGCAGCAAGACATTCTCGCTCCTTCCGGGAGTGGTGGTGGTGGCTACTGAGGAAGAGGAAGTAGCTAGCTCGAAGATGAACGCTCGCTTG