Detailed information on CNT30241722


BLAST search results

BLAST vs Swiss-Prot:
sp|P27497|CB29_MAIZE, E-value = 9e-174

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695874Avena sativaOryza sativa60.6759.1488.91631forward
CNT30455809Avena sativaSaccharum spontaneum65.8762.987.45685forward
CNT30575045Avena sativaOryza barthii65.9672.6788.19686forward

Expression of CNT30241722

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MVTRASPKRADDGRFFTAFPAKAGEESAMAVVAIALTVDVLCALQE*

>peptide 2 (79 aa)
MENMARRPFLSSLTLSSANASGSSAKPRGSKLPPGYSGSTISPSGPPATRYPSTAPMSTTWQAQIARMLCACTRLGLPR*

>peptide 3 (87 aa)
MVSEVLEGALAGDDGLNKEAEHGEHGEAAVLELLNLELRKCLRVVGQTEGVEAAAWVQWVDNLTERATGNAVPLNGAHEHDLAGPDR*

>peptide 4 (29 aa)
MAHREWITSSSRFLAKVSGSAESPAVSHP*

>peptide 5 (37 aa)
MAGSSPPFRQRPGRRVPWRWSPLLLQLMCCVLSKSEAL

>peptide 6 (38 aa)
MPPGRRPNRGGRSCRLGTVGRQSHRAGHRQRGTPQRRP*

>peptide 7 (38 aa)
MAYLPGTKLVANAHALLLTGSARWSARFSRGPLPVTMA*

Sequence

>CNT30241722
TGGCTCCTGCTTATAAGACAGTGAAGATTTTTGCAACACCGTGACATCAGAAAACAGGCCTCAAAATCTAGTAACATGTTTCCAAAGGATCAATCCTCAT
AATTTACATCACGGTAGTACAAGTGAAACCAGTTTTGCACACTTCACCACGTGCACGGTCTCCCCGACACCTGCAGCTCACGGGCGCGGCCTTAATCTGC
ACCCTTAGTGATGGCTTATTTGCCAGGAACAAAGTTGGTGGCGAATGCCCATGCGTTGTTGTTGACAGGGTCAGCAAGATGGTCAGCGAGGTTCTCGAGG
GGGCCCTTGCCGGTGACGATGGCCTGAACAAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTAACCTTGAGCTCCGCAAATG
CCTCCGGGTCGTCGGCCAAACCGAGGGGGTCGAAGCTGCCGCCTGGGTACAGTGGGTCGACAATCTCACCGAGCGGGCCACCGGCAACGCGGTACCCCTC
AACGGCGCCCATGAGCACGACCTGGCAGGCCCAGATCGCTAGGATGCTCTGCGCGTGCACCAGGCTCGGGTTGCCGAGATAGTCGAGGCCTCCCTCGCTG
AAGATCTGGGAGCCGGCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCATTGCGGGCGAGCAGCTCTGGGAAGACGCAACCGAGCGCACCGAGCATGG
CCCACCGTGAGTGGATCACTTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCCGAGAGCCCGGCGGTGTCCCACCCGTAGTCTCCCGGGAACTC
GCCGGTGAGCGGGCCGAGGTAGAGCACGCGGTCGGAGCCATACCACGGGCTGCCCGAGGACACCGGCTTGGCCTTAGCGGCGGTCTTGCGCATGGTGACG
CGGGCCTCGCCGAAGAGGGCGGACGATGGCAGGTTCTTCACCGCCTTTCCGGCAAAGGCCGGGGAGGAGAGTGCCATGGCGGTGGTCGCCATTGCTCTTA
CAGTTGATGTGTTGTGTGCTCTCCAAGAGTGAGGCGCTGG