« Back to Populus trichocarpa search


Detailed information on CNT3024160


BLAST search results

BLAST vs Swiss-Prot:
sp|D7SFH9|LRL26_ARATH, E-value = 4e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30652116Populus trichocarpaRosa chinensis27.2319.0881.25128forward
CNT30573477Populus trichocarpaVitis vinifera21.286.4183100forward

Expression of CNT3024160

Peptides detected in this lncRNA

>peptide 1 (28 aa)
MKGSTSGLNDLPMHSDFSFSQPFPSTTSQ

>peptide 2 (80 aa)
MLQPLDGSLKLVGLAILILSSFDVCCGTRKGLGGICRDSISASSICTTLCIEGRSIGFNCMHHNATIVIFFIVFFSCSVA*

Sequence

>CNT3024160
TTCAGATAGTTAAGGCATACAAAATTAACATATTACATAAATAAACAAACATATAAGAGTATTTCTATCAACGACCAAATTGATATGAAGAATCGATGCT
ACAACCATTGGACGGATCTCTTAAACTTGTTGGATTAGCCATATTGATCCTATCATCATTTGATGTCTGTTGTGGAACGAGAAAAGGCTTAGGAGGTATT
TGTAGAGATTCAATATCTGCTTCAAGCATCTGTACAACTCTGTGCATCGAGGGACGATCAATAGGCTTCAATTGTATGCACCATAATGCCACTATAGTCA
TCTTTTTTATTGTATTCTTTTCCTGCTCTGTCGCTTGATCTTCAAGTATATCCCTTCCTTCATTAACCTGATCATAAATCCATGAAGGGAAGTACATCTG
GCTTGAATGATCTGCCAATGCATTCAGATTTTTCCTTCTCCCAACCATTTCCATCAACAACATCCCAAAA