Detailed information on CNT30241489


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553919Avena sativaOryza glaberrima24.8127.3580.98163reverse complement
CNT3011843Avena sativaZea mays21.3117.9380.71140forward
CNT30689516Avena sativaTriticum urartu20.47.8582.84134forward
CNT30101726Avena sativaOryza rufipogon25.7229.680.47169reverse complement
CNT30576293Avena sativaOryza barthii21.7727.3981.12143reverse complement

Expression of CNT30241489

Peptides detected in this lncRNA

>peptide 1 (59 aa)
VAVAETKQAFHRFVEVQPTAPVRDPLAPSPAVFRCCCPCLHRAAATVADSSFVQHYCIR*

>peptide 2 (77 aa)
MTGFGSLGPKTKNLVVAGGLTAFVVGAYYYTMHAVGGTDELQAAINKFENLKKKDAAESAVAANPSTPASTYRKRML*

>peptide 3 (39 aa)
MTCFGVVNQWCLKFPDSWPCSSFMSKNYYFYGCIVYILH*

>peptide 4 (29 aa)
MRPNPPSPRTPPPQHQRIEKECYNSLPLQ*

Sequence

>CNT30241489
CGTGGCTGTAGCTGAAACAAAGCAAGCCTTCCACAGGTTTGTCGAGGTCCAGCCTACCGCACCCGTCCGAGACCCACTTGCCCCTTCACCTGCTGTGTTC
CGCTGCTGCTGCCCTTGCCTTCACCGCGCCGCCGCCACCGTCGCCGATTCATCCTTCGTTCAGCACTACTGCATTCGCTAGAGATGACGGGATTCGGCTC
CCTGGGTCCCAAGACCAAGAACCTGGTGGTGGCAGGCGGCCTGACGGCGTTTGTCGTCGGCGCATACTACTACACAATGCATGCGGTGGGCGGCACAGAC
GAGCTCCAGGCCGCCATCAACAAGTTTGAGAACCTGAAGAAAAAGGATGCGGCCGAATCCGCCGTCGCCGCGAACCCCTCCACCCCAGCATCAACGTATA
GAAAAAGAATGCTATAATTCCCTGCCCCTCCAGTAGCGAGGTTTCTGTCTAGTAGTTCCTGCTGCCTCATAACCTGCTGCCCCAGGACCATGCTTTTGTA
TGATAAGAACAGTAACAAGGGGTAGTAGAGTGTCTTATGACATGTTTTGGTGTGGTTAATCAGTGGTGTCTGAAATTTCCTGATAGTTGGCCATGTTCTT
CCTTCATGTCCAAGAATTATTATTTTTATGGCTGCATTGTCTATATATTACACTGAC