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Detailed information on CNT30241434


BLAST search results

BLAST vs Swiss-Prot:
sp|P27497|CB29_MAIZE, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224540Avena sativaHordeum vulgare69.9772.6886.46790forward
CNT30394768Avena sativaTriticum turgidum69.8866.1488.09789forward
CNT30665770Avena sativaTriticum dicoccoides69.8882.8888.34789forward

Expression of CNT30241434

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MPPGRRPNRGGRSCRLGTVGRQSHRAGHRQRGTPQRRP*

>peptide 2 (38 aa)
MAYLPGTKLVANAHALLLTGSARWSARFSRGPLPVTMA*

>peptide 3 (29 aa)
MAHREWITSSSRFLAKVSGSAESPAVSHP*

>peptide 4 (46 aa)
MVTRASPKRADDGRFFTAFPAKAGEESAMAVVAIALTVDVLCALQE*

>peptide 5 (41 aa)
MAGSSPPFRQRPGRRVPWRWSPLLLQLMCCVLSKSEALVCEE

>peptide 6 (87 aa)
MVSEVLEGALAGDDGLNKEAEHGEHGEAAVLELLNLELRKCLRVVGQTEGVEAAAWVQWVDNLTERATGNAVPLNGAHEHDLAGPDR*

>peptide 7 (79 aa)
MENMARRPFLSSLTLSSANASGSSAKPRGSKLPPGYSGSTISPSGPPATRYPSTAPMSTTWQAQIARMLCACTRLGLPR*

Sequence

>CNT30241434
TCTTCCTTCAACGTTCGATGATGGTCATATATAGTACGTCTTAGCCCATCAATGGCTCCTGCTTATAAGACAGTGAAGATTTTTGCAACACCGTGACATC
AGAAAACAGGCCTCAAAATCTAGTAACATGTTTCCAAAGGATCAATCCTCATAATTTACATCACGGTAGTACAAGTGAAACCAGTTTTGCACACTTCACC
ACGTGCACGGTCTCCCCGACACCTGCAGCTCACGGGCGCGGCCTTAATCTGCACCCTTAGTGATGGCTTATTTGCCAGGAACAAAGTTGGTGGCGAATGC
CCATGCGTTGTTGTTGACAGGGTCAGCAAGATGGTCAGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGAACAAAGAAGCCGAACATGGAG
AACATGGCGAGGCGGCCGTTCTTGAGCTCCTTAACCTTGAGCTCCGCAAATGCCTCCGGGTCGTCGGCCAAACCGAGGGGGTCGAAGCTGCCGCCTGGGT
ACAGTGGGTCGACAATCTCACCGAGCGGGCCACCGGCAACGCGGTACCCCTCAACGGCGCCCATGAGCACGACCTGGCAGGCCCAGATCGCTAGGATGCT
CTGCGCGTGCACCAGGCTCGGGTTGCCGAGATAGTCGAGGCCTCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAGACGGCCTCGCCGAACTTGACG
CCATTGCGGGCGAGCAGCTCTGGGAAGACGCAACCGAGCGCACCGAGCATGGCCCACCGTGAGTGGATCACTTCCAGCTCCCGGTTCTTGGCGAAGGTCT
CGGGGTCGGCCGAGAGCCCGGCGGTGTCCCACCCGTAGTCTCCCGGGAACTCGCCGGTGAGGTAGCTCGGGGGCTCGCCGGAGAGCGGGCCGAGGTAGAG
CACGCGGTCGGAGCCATACCACGGGCTGCCCGAGGACACCGGCTTGGCCTTAGCGGCGGTCTTGCGCATGGTGACGCGGGCCTCGCCGAAGAGGGCGGAC
GATGGCAGGTTCTTCACCGCCTTTCCGGCAAAGGCCGGGGAGGAGAGTGCCATGGCGGTGGTCGCCATTGCTCTTACAGTTGATGTGTTGTGTGCTCTCC
AAGAGTGAGGCGCTGGTGTGTGAGGAGAT