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Detailed information on CNT3024143


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 3e-157

BLAST vs NONCODE:
NONMEST001181, E-value = 7e-136

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30200107Populus trichocarpaPisum sativum89.3375.6282.99670forward
CNT30624140Populus trichocarpaDaucus carota90.9374.9584.16682forward

Expression of CNT3024143

Peptides detected in this lncRNA

>peptide 1 (72 aa)
IPFNNCQLPPTEPQILASSLFRNHHGGEARGAEWTPSGYCNQPRSFHLQAASRQRSTSAGLVESPPCPGFWP*

>peptide 2 (53 aa)
MPSLSWIFALTLSMVSELSTSKVIVLPVRVLTKICIPPLKRRTKWRVDSFWML*

Sequence

>CNT3024143
ATTCCCTTTAACAATTGCCAGTTACCACCAACAGAACCACAAATACTAGCATCATCACTGTTTAGAAACCACCACGGAGGCGAAGCACGAGGTGCAGAGT
GGACTCCTTCTGGATATTGTAATCAGCCAAGGTCCTTCCATCTTCAAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATCCCCTCCTTG
TCCTGGATTTTGGCCTTAACATTGTCAATTGTGTCCGAGCTCTCAACTTCCAAGGTGATGGTCTTCCCGGTGAGTGTCTTGACAAAGATCTGCATACCTC
CACGCAAGCGCAGCACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTGCGCCCATCCTCTAGCTGCTTGCCAGCAAAGATAAGCCT
CTGTTGATCTGGGGGGATGCCCTCTTTGTCCTGGATTTTTGCCTTGACATTATCGATGGTGTCAGAGCTCTCTACCTCCAAGGTGATTGTCTTGCCAGTG
AGGGTCTTAACAAAAATCTGCATACCACCTCTCAAACGTAGAACCAAGTGGAGAGTGGATTCCTTTTGGATGTTATAATCAGCAAGGGTTCGTCCATCCT
CAAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGGGGGATCCCTTCCTTATCCTGGATCTTGGCTTTCACATTATCAATAGTATCCGAGCTTTC
CACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAAATTTGCA