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Detailed information on CNT3024141


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 1e-171

BLAST vs NONCODE:
NONMEST001181, E-value = 3e-154

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30418468Populus trichocarpaPapaver somniferum75.6161.5483.81741forward

Expression of CNT3024141

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MSLCWSGGMPSLSWILAFTLSMVSELSTSKVMVFPVKVFTKICIPPRRRSTKWRVDSFWML*

>peptide 2 (48 aa)
MEGGLLLDVIISKGAAILELLSGKDQPLLVRRDTFLVLDLGLDIVNCV*

>peptide 3 (42 aa)
FKVNFTGNQECIKKRKFIAVNQRRVYDFLKPDRNHNQTAYLK*

Sequence

>CNT3024141
TTTTAAGGTGAATTTCACAGGCAATCAGGAATGTATTAAAAAGAGGAAATTTATTGCAGTAAATCAAAGACGAGTTTATGACTTCCTTAAACCAGACAGA
AACCATAACCAAACAGCATACTTAAAATAGTTCCGAGAACATTATAGATTCCCTTTAACAATTGCCAGTTACCACCAACAGAACCACAAATACTAGCATC
ATCACTGTTTAGAAACCACCACGGAGGCGAAGCACGAGCTCTCAACTTCCAAGGTTATGGTCTTCCCAGTGAGGGTCTTCACAAAGATCTGCATACCACC
ACGGAGGCGAAGAACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCAGCAAGAGTGCGCCCATCCTCAAGTTGCTTCCCAGCAAAGATGAGTCTC
TGTTGGTCTGGAGGGATGCCCTCCTTATCTTGGATTTTAGCCTTCACATTATCAATGGTGTCAGAGCTCTCCACCTCCAAGGTAATGGTCTTCCCAGTCA
AAGTCTTCACGAAAATCTGCATACCACCTCGAAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAATCAGCAAGGGTGCGGCCATCCTC
GAGCTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATTGTGTCTGAGCTCTCA
ACTTCCAAGGTGATTGTCTTGCCAGTGAGGGTCTTAACAAAAATCTGCATACCACCTCTCAAACGTAGAACCAAGTGGAGAGTGGATTCCTTTTGGATGT
TATAATCAGCAAGGGTTCGTCCATCCTCAAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGGGGGATCCCTTCCTTATCCTGGATCTTGGCTTT
CACATTATCAATAGTATCCGAGCTTTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAAATTTGCATCT