CANTATAdb - search

Detailed information on CNT30241118

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30677148	Avena sativa	Setaria viridis	13.66	47	91.49	94	reverse complement
CNT30524614	Avena sativa	Setaria italica	13.95	20.92	88.54	96	reverse complement

Expression of CNT30241118

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MCVRSRAYLATPVAYNKDIDNVHCYMCVVCSNMFIYSLWP*

>peptide 2 (89 aa)
MEDNKRLTRTSTLMMIMCLLIFSLTINSAAAGDCDCCISTAAKACCFSCTLVSPAFICRNTCCFPCNVVDSVVAETEEMGVVAKMEEQN*

>peptide 3 (31 aa)
MLSIPWLLKQKKWELLLRWKNKTKTICLNFY*

Sequence

>CNT30241118
GGCACCTCACAAAATATAAGACAAGAAACATAGCTAGACAACCAAGGAAGGAATAGCAACAACAAGAGGCAATGGAGGACAACAAGAGGCTCACTAGAAC
TTCCACTTTGATGATGATCATGTGTCTACTGATCTTCAGCCTCACTATCAACTCGGCTGCAGCAGGAGATTGCGACTGCTGCATAAGCACCGCGGCAAAA
GCATGCTGTTTTTCTTGCACGCTGGTTTCCCCCGCCTTTATCTGCAGGAACACTTGTTGTTTCCCCTGTAATGTTGTCGATTCCGTGGTTGCTGAAACAG
AAGAAATGGGAGTTGTTGCTAAGATGGAAGAACAAAACTAAAACGATATGCTTGAATTTCTACTAGCATGGATGCAATTCATATATGCATCGCTTCAGCT
ATGGGCAAGTTATGTTAATGTTTACCTCCAATAAATTGTTGTCTATATGGGGTGACCTCTAGTCGATCCATGTATTGGTCTCAACTATATAAATGTCCTA
CTTGTGTGCATGTGTGTGCGCTCACGAGCCTATTTAGCGACTCCGGTTGCCTATAATAAGGACATAGACAATGTCCACTGTTATATGTGTGTTGTATGTT
CTAATATGTTTATATATTCTCTCTGGCCTTAGAAATTATATTGGAACTTGATTATTGATATATTTTTATGCATGTGCTTTATTTTTCA