Detailed information on CNT30241012


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6YZY5|GL811_ORYSJ, E-value = 4e-125

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695531Avena sativaOryza sativa6.2832.685.1474forward

Expression of CNT30241012

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MRAKEIPNVFRPGIRMTLIKVTLDPTLLTFVSLGMSSLAAKKKSSAFTSIGFLQTNPLTRTA*

>peptide 2 (58 aa)
SNNNKLLCLEYFIVRCTIFSSERSVHDIWGQANEIQHKNKCNIQQYSAYLHITNTIIN*

>peptide 3 (30 aa)
MRPRQKERREGNKKRRPFEFLLKVAVRLWLR

>peptide 4 (44 aa)
MRPRQKERREGNKKRRPFEFLLKVVVRFCCRQHRSPGEGSGQKQ*

>peptide 5 (30 aa)
MSPSGNTNTSPLLSTFDKNLFSGLDVTKPT*

Sequence

>CNT30241012
CAAGTAACAACAATAAATTACTATGTTTAGAGTATTTCATTGTAAGGTGTACAATATTTTCATCTGAGCGATCCGTACATGATATATGGGGTCAAGCTAA
TGAAATACAACACAAAAATAAATGTAATATTCAACAGTATAGTGCTTATTTGCATATAACCAACACAATAATTAATTAATTCTGGTTGTCTGCCCAAAAC
TGAGCTTGAAGCCAGTCCACGGTCTTCTTCTCCACCTGGAATGCCTTGGCAAGAACATCATCTGATATAGCTGGTTTTGACCCAAACACAGCGTTAGCAA
TGGTAATAGCCCCAGGGTTCTGGCTGCTAAGTGCAGCAATTGCCACTGCCGGTTTGTAGGGATTAGGGTTGAATTGGAAGTGGATGAGTCCTTCTGGGAA
TACAAACACGTCACCCTTGTTGAGCACCTTTGACAAGAACTTGTTTTCTGGGTTGGATGTCACGAAGCCGACATAAAGGGTCCCTTCAAGCACGGTGAGG
ATCTCAGTGGCACGCGGGTGAGTGTGCGGTGGGTTCTCACCTAAAGGTGCATAGTCGATGCGGGCCAAGGAGATTCCCAATGTGTTTAGGCCAGGAATTC
GCATGACATTGATCAAAGTGACATTGGACCCAACCTTGCTCACTTTCGTGTCTCTCGGCATGTCGAGTTTGGCCGCCAAGAAGAAGTCTTCAGCCTTCAC
ATCCATTGGGTTTTTACAGACAAACCCATTAACAAGAACTGCATAATGGAGGGCATATTAGAATCAGTTGAGTCACAATGCTAACAAAATTTGAAATTAA
ATGCATGCTAAATACACCACACGGACTTTGTATATGAGTACTACTTGATTTTGATCCAGTGTTGAAAACTACATACCACGTGAGCTGTTGTCGGCAACAC
AGAAGTCCTGGAGAGGGCTCGGGTCGGAAGCAATAGCCTGCCATGAGGCCAAGGCAAAAAGAGCGACGAGAAGGAAATAAGAAGAGGAGGCCATTTGAGT
TTTTGTTGAAGGTGGTTGTGCGTTTCTGTTGTCGGCAACACAGAAGTCCTGGAGAGGGCTCGGGTCAGAAGCAATAGCCTGCCATGAGGCCAAGGCAAAA
AGAGCGACGAGAAGGAAATAAGAAGAGGAGGCCATTTGAGTTTTTGTTGAAGGTGGCTGTGCGTTTGTGGCTCCGTTG