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Detailed information on CNT30240926


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30597299Avena sativaFraxinus excelsior26.1732.681.01179forward
CNT30363502Avena sativaSorghum bicolor51.7553.0790.96354forward
CNT3024639Avena sativaPopulus trichocarpa17.2528.6482.2118forward

Expression of CNT30240926

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MVGFLLYLASLADSPASFSKMSLMKEFMMDMALEEMPMSGWTCLRTLKM*

>peptide 2 (40 aa)
MSHDTLDHLTNTPYNLETNKEPGDITDETVQEDKEQPKRR*

>peptide 3 (35 aa)
HRNLNLEPSTELGRQRRRYHKTAAKEEVTEMFRSK*

>peptide 4 (83 aa)
MSRRSSWPSSCPSSRRPPWRRSCPPAAASRPWASSRRGSSSPRSPPPRASSPPASSLPWAPWVLLGGAGGGVELGGGRTGGELL

Sequence

>CNT30240926
CATCGGAACCTGAATCTTGAACCAAGCACTGAACTAGGAAGACAGAGGAGACGGTACCACAAGACAGCAGCCAAGGAAGAAGTGACAGAGATGTTCAGAT
CAAAATAACAATCGTTCTTCCAACAACAGACACATTCCATACAAGATTCAGTCATGAGTCATGACACGCTGGACCATCTAACTAATACACCATACAACCT
CGAAACAAACAAGGAACCAGGAGACATCACAGACGAGACCGTCCAAGAAGACAAGGAACAGCCTAAGAGGAGGTGATGGTGGGCTTCTTGTTGTACCTCG
CGAGCTTGGCAGACTCGCCGGCCAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCGGGGTGGAC
CTGCTTGAGGACCTTGAAGATGTAGATCTTGTATGTCTCGACGCTCTTCTTGGCCTTCTTCTTGCCCTTCTTCTCGCCGCCCTCCTTGGAGGCGGTCTTG
CCCGCCGGCAGCCGCTTCTCGGCCTTGGGCTTCTTCCCGGCGGGGGTCTTCTTCGCCGCGGTCTCCTCCTCCACGGGCTTCTTCTCCGCCGGCTTCTTCT
CTGCCTTGGGCGCCATGGGTGCTTCTCGGAGGAGCTGGAGGCGGGGTGGAGCTGGGAGGTGGTAGAACTGGTGGGGAATTGCTT