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Detailed information on CNT30240769


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30180942Avena sativaSecale cereale44.3736.6485.59347forward
CNT30385545Avena sativaTriticum turgidum44.2535.3886.71346forward
CNT30466191Avena sativaSaccharum spontaneum20.8423.5588.34163forward
CNT30132778Avena sativaLolium perenne51.9251.0790.64406forward
CNT3017302Avena sativaZea mays19.6921.5788.31154forward
CNT30342484Avena sativaEragrostis tef20.7225.2790.74162forward
CNT30596127Avena sativaOryza meridionalis24.0429.1587.77188forward
CNT30107264Avena sativaOryza longistaminata25.4526.3686.93199forward
CNT30585288Avena sativaEchinochloa crusgalli19.9530.9589.74156forward
CNT30603959Avena sativaOryza punctata25.726.3187.06201forward

Expression of CNT30240769

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MDLRSGVSLGRTNWIGRKIHLYNVNIGLYMLDWWERYLFNTLMLCLIWYILRYLIVFFQSNLETISQGANYLLQGRYSS*

>peptide 2 (30 aa)
LFIVPQYGKRENYQPNTPRTASMVAPLLLR*

>peptide 3 (63 aa)
LVYCAPIRETGKLPTKHAPNGFYGGATTAKVVRCDILREAIQISRVGCHTAPIPPNTTPFFLL*

Sequence

>CNT30240769
CTTGTTTATTGTGCCCCAATACGGGAAACGGGAAAACTACCAACCAAACACGCCCCGAACGGCTTCTATGGTGGCGCCACTACTGCTAAGGTAGTAAGGT
GCGACATCCTGCGTGAGGCGATCCAGATCTCGAGAGTGGGTTGTCACACCGCCCCGATCCCACCAAACACCACGCCCTTCTTCCTCCTCTGAAAATCCAA
CACCCCGCCGCATCCTTCAGACCTGAGCGATGGATCTACGGAGCGGGGTCTCTTTGGGGAGGACGAACTGGATCGGGCGCAAGATCCACCTATACAATGT
CAACATCGGCCTTTACATGCTCGATTGGTGGGAGCGCTACCTGTTCAATACATTGATGCTTTGCCTTATTTGGTACATCCTCCGGTATCTCATCGTGTTC
TTTCAGAGTAATCTGGAGACCATCTCACAAGGTGCAAACTATCTTCTACAAGGCAGATACTCGTCATAGGCAAAAACATATGTTGATGGCGTTAACTAGT
TCCTCTTGTAATTTCATCTATTTGTTTAGTTTCGGCTGAGGAACTAGAAATAAGGAACTAGAAATAAGCAGTTTATCTGTAAGTTCCACCTGTTGTTTTG
TATCCTTTCTGCTGTACTTTCCCTGGAAGATGCAAGTTTCGGGCATTTGTTTTTGTGAAGCAAACATAGATGTGATGTGTAAGATTGACATTTAGTATTG
TCCATGATTGTTGTAATACATTGGTTTTGCTTATTCTCAGTTGCCTGAAACTTTCATAAATAATCTTGTTATCTCAATTTGC