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Detailed information on CNT30240700


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30283621Avena sativaTriticum aestivum73.1699.4895.13575reverse complement
CNT30383394Avena sativaTriticum turgidum10092.0495.42786forward
CNT30365083Avena sativaSorghum bicolor97.242.0793.19764forward

Expression of CNT30240700

Peptides detected in this lncRNA

>peptide 1 (32 aa)
AQLRANLELTKLVGRLRQQDGGHGSRNPLRSV*

>peptide 2 (36 aa)
MGKPILRDGVTPTDSAIMRIPQKGIGLRFSEPGCGG*

>peptide 3 (32 aa)
MKIWRTEYRPRPVVLITALGLQGEQPLANGTM*

Sequence

>CNT30240700
GCCCAACTGCGTGCTAACCTAGAACTCACAAAGCTTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAAC
AACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCCCTGAAGCGCGCGACCCACACCCGGCCATCTGGGCGAGCGCCATGCCCCGATGAGTAGGA
GGGCGCGGCAGCCGCTGCAAAACCTGGGGCGCGAGCCCGGGCGGAGCGGCCGTCGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTG
AAGGCCGAAGAGTAGAAATGTTCCATGTGAATGGAACTTGCAAATGGGTAAGCCGATCCTAAGGGACGGGGTAACCCCGACAGATAGCGCGATTATGCGC
ATCCCCCAAAAGGGAATCGGGTTAAGATTTTCCGAGCCGGGATGTGGCGGTTGACGGCGACGTTAGGAAGTCCGGAGACGCCGGCGGGGGCCTCGGGAAG
AGTTATCTTTTCTGCTTAACGGCCTGCCAACCCTAGAATCGGTTCAGCCGGAGGTAGTGTCCAGTGGTCGGAAGAGCACCGCACGTCGCGTGGTGTCCGG
TGCGCCCCCTGCGGCCCATGAAAATCTGGAGGACCGAGTACCGTCCACGCCCGGTCGTACTCATAACCGCATTAGGTCTCCAAGGTGAACAGCCTCTGGC
CAATGGAACAATGTAGGCAAGGGAAGTCGGCAAAACGGATACGTAACTTCGGGAAAAGGATTGGCTCTAAGGACTAGGCTTGGGGG