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Detailed information on CNT3024066


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 5e-157

BLAST vs NONCODE:
NONMEST001181, E-value = 4e-141

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3061830Populus trichocarpaArabidopsis lyrata73.9548.983.7687forward

Expression of CNT3024066

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MEGGLLLDVIISKGAAILELLSGKDQPLLVRRDTFLVLDLGLDIVNCV*

>peptide 2 (61 aa)
MSLCWSGGMPSLSWILAFTLSMVSELSTSKVMVFPVKVFTKICIPPRRRSTKWRVDSFWML*

>peptide 3 (42 aa)
FKVNFTGNQECIKKRKFIAVNQRRVYDFLKPDRNHNQTAYLK*

Sequence

>CNT3024066
TTTTAAGGTGAATTTCACAGGCAATCAGGAATGTATTAAAAAGAGGAAATTTATTGCAGTAAATCAAAGACGAGTTTATGACTTCCTTAAACCAGACAGA
AACCATAACCAAACAGCATACTTAAAATAGTTCCGAGAACATTATAGATTCCCTTTAACAATTGCCAGTTACCACCAACAGAACCACAAATACTAGCATC
ATCACTGTTTAGAAACCACCACGGAGGCGAAGAACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCAGCAAGAGTGCGCCCATCCTCAAGTTGCT
TCCCAGCAAAGATGAGTCTCTGTTGGTCTGGAGGGATGCCCTCCTTATCTTGGATTTTAGCCTTCACATTATCAATGGTGTCAGAGCTCTCCACCTCCAA
GGTAATGGTCTTCCCAGTCAAAGTCTTCACGAAAATCTGCATACCACCTCGAAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAATCA
GCAAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTGT
CAATTGTGTCTGAGCTCTCAACTTCCAAGGTGATTGTCTTGCCAGTGAGGGTCTTAACAAAAATCTGCATACCACCTCTCAAACGTAGAACCAAGTGGAG
AGTGGATTCCTTTTGGATGTTATAATCAGCAAGGGTTCGTCCATCCTCAAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGGGGGATCCCTTCC
TTATCCTGGATCTTGGCTTTCACATTATCAATAGTATCCGAGCTTTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAAATTTGCATCT
GATCACATAACAAAACACGGACAAGATCA