CANTATAdb - search

Detailed information on CNT30240626

BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 1e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30226003	Avena sativa	Hordeum vulgare	41.72	56.94	90.91	242	forward

Expression of CNT30240626

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MRRCWSGGIPSLSWILALTLSMVSEDSTSRVMVLPVRMRRCWSGGMPSLSWILALTCRWCRTTRPPG*

>peptide 2 (44 aa)
RISHYIEGSLIHSYHSSSKATAPQQKFVDTGFITLPQYDSTDRD*

>peptide 3 (62 aa)
MARHLLATTEAEHQVKGGLLLDVIVRQGAAILKLLAGEDEALLVRRDTLLVLDLGLDVVDGV*

>peptide 4 (36 aa)
MTAPPEHTDGTRLVNPKNQAAPWLGTYWPPRRRSTK*

Sequence

>CNT30240626
TAGAATTTCACACTACATAGAAGGTTCACTTATTCATTCATATCACAGTTCATCCAAAGCTACTGCACCACAGCAGAAGTTTGTAGACACAGGCTTTATA
ACACTACCACAATACGACAGCACAGATAGAGACTGACAACCAAACCAGACGACGACACAATGACAGCTCCACCGGAGCACACCGACGGCACCAGACTTGT
GAACCCAAAGAACCAAGCAGCGCCATGGCTAGGCACTTACTGGCCACCACGGAGGCGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCC
GCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGT
CGATGGTGTCTGAGGACTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGC
CTTGACGTGTCGATGGTGTCGGACGACTCGACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACGAATATCTGCAT