CANTATAdb - search

Detailed information on CNT30240569

BLAST search results

BLAST vs Swiss-Prot:
sp|P68430|H32_ONOVI, E-value = 2e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30441386	Avena sativa	Aegilops tauschii	55.88	75.21	93.35	361	forward
CNT30309861	Avena sativa	Camelina sativa	26.32	27.42	80.59	170	forward
CNT30358481	Avena sativa	Lactuca sativa	26.32	18.56	82.94	170	forward
CNT30414942	Avena sativa	Papaver somniferum	33.28	26.45	78.6	215	forward
CNT3099660	Avena sativa	Oryza rufipogon	39.32	56.07	89.76	254	forward

Expression of CNT30240569

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MRSSVLFWYLRISRSATVPGLKRWGFFTPPVAGADLRAALVASCFLGALPPVDFLAVCFVRAIRTGG*

>peptide 2 (38 aa)
MRRASWISLGMMVTRLAWMAQRLVSSKRPTSSGSGGRS*

Sequence

>CNT30240569
GACAAACAAGTAAAGGTACAGAACACATAACTGAGATCTGATAACCAACATTTTCATTGCTGATGATAACAAGAAGGTAACATCAGACAGGACACAGGAC
GACAACATAACACAGACACCATCTAGATTCCAGCACGCACTCAGATACGAACAGGCAAACTTTCCTAACTCCCAGGTCGGACACTACAACGTACTCTACG
CCCTCTCCCCACGGATGCGGCGGGCGAGCTGGATATCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGCGCAGAGGTTGGTGTCCTCAAAGAGACC
GACGAGCTCTGGAAGCGGAGGTCGGTCTTGAAGTCCTGGGCGATCTCCCGCACCAGGCGCTGGAAGGGCAGCTTGCGGATGAGGAGCTCCGTGCTCTTCT
GGTACTTGCGGATCTCACGGAGCGCGACGGTGCCGGGCCTGAAGCGGTGGGGCTTCTTCACGCCGCCGGTGGCCGGGGCGGACTTGCGGGCGGCCTTGGT
CGCCAGCTGCTTCCTCGGCGCCTTGCCCCCGGTGGACTTCCTCGCCGTCTGCTTCGTGCGGGCCATCAGGACGGGAGGCTAGGGTTGGATTTGCGTCGAG
GGTGGGGGGGAGGGAGGAGCTCTTGGGAGTTCTCGCTGGGAATGGA