« Back to Avena sativa search


Detailed information on CNT30240454


BLAST search results

BLAST vs Swiss-Prot:
sp|P20143|PSAH_HORVU, E-value = 1e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693639Avena sativaOryza sativa30.6811.2794.44108forward
CNT30520974Avena sativaSetaria italica52.8422.684.95186forward
CNT30285918Avena sativaTriticum aestivum61.3645.9693.06216forward
CNT30591852Avena sativaMusa acuminata25.8521.8289.0191forward
CNT30435258Avena sativaAegilops tauschii63.9279.2392.44225forward
CNT30657122Avena sativaTriticum dicoccoides67.0545.1292.37236forward
CNT30130278Avena sativaLolium perenne64.4925.8896.04227forward
CNT30679308Avena sativaTriticum urartu66.4835.7393.16234forward
CNT30720193Avena sativaTriticum spelta63.9241.2192.44225forward
CNT30338878Avena sativaEragrostis tef44.620.1387.9157forward
CNT30367799Avena sativaSorghum bicolor23.8612.991.6784forward
CNT30370255Avena sativaOryza glumipatula30.6816.9594.44108forward
CNT30101773Avena sativaOryza rufipogon30.6813.1194.44108forward
CNT30116717Avena sativaOryza nivara30.6813.1494.44108forward
CNT30604129Avena sativaOryza punctata30.6817.2291.67108forward

Expression of CNT30240454

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MATARRSRTGPTAPSCCRCPPGRSTRSSPRTWPPPP

>peptide 2 (32 aa)
GIGSMVQEGRKGLNRLRSCRVGPGWAAAGAPS*

Sequence

>CNT30240454
TCGGCATCGGATCCATGGTACAAGAAGGCAGGAAAGGATTGAACAGGCTTAGATCTTGCCGCGTGGGCCCGGGGTGGGCGGCAGCTGGGGCCCCTTCTTG
ATGGGGAGCAGGTCCGGCGAGGCGCTGGCGGAGACGTAGGCCAGCAGGGAGCCGCCGCCGAGGAGCAGGAACTTGAGCAGGAGGCCCCGCTTGGTGAAGG
GCGCGGCGAAGGTGTTGAAGAACTTGCTCTGCAGGCCGTTGTATGGCGACGGCGCGTCGGAGCCGTACAGGTCCCACTGCCCCGTCGTGTTGCCGATGTC
CTCCAGGTCGAAGTACACGCTCTTCTCCCCGTACTTGGCCACCACCGCCGCG