Detailed information on CNT30240279


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30382729Avena sativaTriticum turgidum12.623.9492.81153forward
CNT30474047Avena sativaSaccharum spontaneum12.4427.7688.08151reverse complement
CNT30352118Avena sativaEragrostis tef12.4423.384.77151forward

Expression of CNT30240279

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MVRHCSHLLALLSLSFLSKKLYDRNRKSLGHWPSFSTARNQLSSRKYH*

>peptide 2 (41 aa)
MTPQQLATPPRLKAKITTNKKKPLPLCQEASLLLLPSSNHP*

>peptide 3 (38 aa)
QSRRTISELNIPYRKEDTERKGGRKAGSTCQIYSCVGG*

>peptide 4 (29 aa)
MEFVTCCYGSSLFPSPCSTFFVFPFKKII*

>peptide 5 (66 aa)
MLGCPSPNCYLWEKYIYHGICYMLLWFVIVPISLLYFLCLSFQKNYMIVTGNHWDIGHLLAQLETN*

>peptide 6 (49 aa)
MGKMCCSSESEEEAGFSFMGLLVAAVIALVFILLCTPPRRRSVTVYPCC*

>peptide 7 (54 aa)
MSFSVTWFFSGGSRSMHVSRPSAGSNQKQRLQNISRLSQRFYTSGQISKFYYTV*

Sequence

>CNT30240279
GGCAAAGCCGAAGAACTATCTCTGAACTGAACATTCCATACCGAAAGGAAGACACAGAGAGAAAGGGAGGAAGAAAGGCCGGATCTACTTGCCAGATATA
CTCCTGTGTGGGTGGCTGATCGGCCTAACCATTCCATCTCAGGCCAGTGGTAGTGGCCTTGGTGGGTGCGAGCATAGGCCCTGAGCTGTCTCCTCTCCGC
CCCTGGAGAGCTGCGAGCAGAGGAGGAGGATGGCATCATTGAAGACCTGACAATGACGCCTCAACAACTGGCCACACCGCCCCGCCTTAAAGCGAAGATC
ACGACCAACAAGAAAAAACCCCTACCACTCTGCCAGGAAGCCTCTCTTCTTCTTCTTCCAAGTTCTAACCACCCTTGATCTCCAGTCCAGCCTAGCTTAG
CACCAGGAGGAAGTAGGCAGACGACATGGGCAAGATGTGCTGCAGCAGCGAGTCGGAGGAGGAGGCGGGGTTCAGCTTCATGGGGCTGCTCGTCGCGGCC
GTCATCGCCCTGGTGTTCATCCTCCTCTGCACGCCGCCGCGCCGGCGCTCCGTCACCGTCTACCCGTGCTGCTGAGGTTGAACAAGTCCCTGCACTGCAT
CTGCATGGGAGCAGGCCAGGCACTGGTTGGTTCATGGCTTTCAGTTCGGAAATAATTTCTACTGAACTGTAGGATCCGTCGAAACTGTAAGCTGTCGATA
TGCTAGGCTGTCCATCTCCGAACTGTTACCTTTGGGAAAAGTACATATATCATGGAATTTGTTACATGCTGCTATGGTTCGTCATTGTTCCCATCTCCTT
GCTCTACTTTCTTTGTCTTTCCTTTCAAAAAAATTATATGATCGTAACAGGAAATCACTGGGACATTGGCCATCTTTTAGCACAGCTAGAAACCAATTAA
GCAGCAGGAAATATCACTGATGTCCTTTTCTGTTACGTGGTTCTTTAGTGGTGGCTCTAGGAGTATGCACGTCTCAAGGCCTAGTGCAGGTTCCAACCAA
AAACAAAGGTTACAGAATATATCAAGATTAAGCCAAAGATTCTACACTTCCGGGCAGATCTCAAAATTTTATTACACGGTCTGAACCAAAAACATCATTG
GAATATCTGATTGTCTGTTAACCACATGAGATAATTGTCAGTACCAGGCCGGCATTGCTTTGCCATACATTTTTTTCCGAAAAGGAGGCAAAGCCTGATC
CCTCTGCCTCGATT