Detailed information on CNT30240221


BLAST search results

BLAST vs Swiss-Prot:
sp|P20143|PSAH_HORVU, E-value = 4e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30178523Avena sativaSecale cereale73.4744.9292.06252forward
CNT30131217Avena sativaLolium perenne77.2653.1195.85265forward
CNT30582819Avena sativaEchinochloa crusgalli72.5929.8283.94249forward

Expression of CNT30240221

Peptides detected in this lncRNA

>peptide 1 (43 aa)
YQQRIQIGEGIGIGSMVQEGRKGLNRLRSCRVGPGWAAAGAPS*

>peptide 2 (39 aa)
MATARRSRTGPTAPSCCRCPPGRSTRSSPRTWPPPPRPGP

Sequence

>CNT30240221
GTATCAACAACGCATACAGATAGGGGAGGGAATCGGCATCGGATCCATGGTACAAGAAGGCAGGAAAGGATTGAACAGGCTTAGATCTTGCCGCGTGGGC
CCGGGGTGGGCGGCAGCTGGGGCCCCTTCTTGATGGGGAGCAGGTCCGGCGAGGCGCTGGCGGAGACGTAGGCCAGCAGGGAGCCGCCGCCGAGGAGCAG
GAACTTGAGCAGGAGGCCGTTGTATGGCGACGGCGCGTCGGAGCCGTACAGGTCCCACTGCCCCGTCGTGTTGCCGATGTCCTCCAGGTCGAAGTACACG
CTCTTCTCCCCGTACTTGGCCACCACCGCCGCGCCCCGGGCCC