Detailed information on CNT30240211


BLAST search results

BLAST vs Swiss-Prot:
sp|P20143|PSAH_HORVU, E-value = 3e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30220389Avena sativaHordeum vulgare57.637.395.71163forward
CNT30435366Avena sativaAegilops tauschii81.6350.7791.34231forward
CNT30656408Avena sativaTriticum dicoccoides75.2754.7694.37213forward

Expression of CNT30240211

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MGSRRPRLVKGAAKVLKNLLCRPLYGDGASEPYRSHCPVVLPMSSRSKYTLFSPYLATTAA

>peptide 2 (32 aa)
GIGSMVQEGRKGLNRLRSCRVGPGWAAAGAPS*

>peptide 3 (35 aa)
MATARRSRTGPTAPSCCRCPPGRSTRSSPRTWPPPP

Sequence

>CNT30240211
TCGGCATCGGATCCATGGTACAAGAAGGCAGGAAAGGATTGAACAGGCTTAGATCTTGCCGCGTGGGCCCGGGGTGGGCGGCAGCTGGGGCCCCTTCTTG
ATGGGGAGCAGGAGGCCCCGCTTGGTGAAGGGCGCGGCGAAGGTGTTGAAGAACTTGCTCTGCAGGCCGTTGTATGGCGACGGCGCGTCGGAGCCGTACA
GGTCCCACTGCCCCGTCGTGTTGCCGATGTCCTCCAGGTCGAAGTACACGCTCTTCTCCCCGTACTTGGCCACCACCGCCGCG