Detailed information on CNT30240130


BLAST search results

BLAST vs Swiss-Prot:
sp|P27497|CB29_MAIZE, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534338Avena sativaEucalyptus grandis65.5158.8385.52663forward
CNT30149365Avena sativaBrachypodium distachyon5892.7388.42587forward
CNT30582453Avena sativaEchinochloa crusgalli67.7964.7290.82686forward

Expression of CNT30240130

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHREWITSSSRFLAKVSGSAESPAVSHP*

>peptide 2 (38 aa)
MAGPSPPFRRRLGRRVPWWWSPLLLQLMCCVLSKSEAVV

>peptide 3 (68 aa)
PQNLVTCFHRINPRNLHHGSTSQTSCAHLTTCTVSLTPAAHRRGLNPQPYRWLICREQSWWRKPRRCC*

>peptide 4 (46 aa)
MVTRASPKRADDGRSFTAFPAKAGEESAMVVVAIALTVDVLCALQE*

>peptide 5 (79 aa)
MAYLPGTKLVAKAQALLLTGSARWSARFSRGPFPVTMACTKKPNMENMARRPFLSSLTLSSAKASGSSAKPRGSKLPPG*

Sequence

>CNT30240130
GGCCTCAAAATCTAGTAACATGTTTCCATAGGATCAATCCTCGTAATTTACATCATGGTAGTACAAGTCAAACCAGTTGTGCACACTTGACCACGTGCAC
GGTCTCCCTGACACCTGCGGCTCACAGGCGTGGCCTTAATCCGCAGCCTTACAGATGGCTTATTTGCCGGGAACAAAGTTGGTGGCGAAAGCCCAGGCGT
TGTTGTTGACTGGGTCGGCCAGGTGGTCAGCGAGGTTCTCGAGGGGGCCCTTTCCGGTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGC
GAGGCGGCCGTTTTTGAGCTCCTTAACCTTGAGCTCCGCGAAGGCCTCTGGGTCGTCGGCCAAGCCGAGGGGGTCGAAGCTGCCACCGGGGTAGAGAGGG
TCGACGATCTCACCGAGCGGGCCACCGGCAACACGGTACCCCTCAACGGCGCCCATGAGCACGACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCGT
GCACCAGGCTCGGGTTGCCGAGGTAGTCGAGGCCTCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCATACGGCCTCACCGAACTTGACGCCATTGCG
GGCGAGCAACTCAGGGAAGACGCATCCGAGGGCGCCGAGCATGGCCCACCGAGAGTGGATCACCTCGAGCTCCCGGTTCTTGGCAAAGGTCTCAGGGTCG
GCCGAGAGCCCGGCGGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTCGGGGGCTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGT
CGGAGCCATACCATGGGCTGCCCGAGGACACCGGCTTGGCCTTAGCGGCGGTCTTGCGCATGGTGACGCGGGCCTCGCCGAAGAGGGCAGACGATGGCAG
GTCCTTCACCGCCTTTCCGGCGAAGGCTGGGGAGGAGAGTGCCATGGTGGTGGTCGCCATTGCTCTTACAGTTGATGTGTTGTGTGCTCTCCAAGAGTGA
GGCGGTGGTGTG