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Detailed information on CNT30240007


BLAST search results

BLAST vs Swiss-Prot:
sp|P68430|H32_ONOVI, E-value = 9e-80

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697930Avena sativaOryza sativa51.1665.8385.37287forward
CNT30519871Avena sativaSetaria italica63.9954.2393.87359forward
CNT30700039Avena sativaQuercus lobata59.1867.8985.24332forward
CNT30279437Avena sativaChenopodium quinoa63.146.2182.49354forward
CNT30200358Avena sativaPisum sativum59.1853.3885.24332forward
CNT3048083Avena sativaPrunus dulcis63.815182.4358forward
CNT30177168Avena sativaSecale cereale64.3548.5995.01361forward
CNT30283601Avena sativaTriticum aestivum64.3555.9794.74361forward
CNT30220094Avena sativaHordeum vulgare62.0360.6394.83348forward
CNT30565750Avena sativaActinidia chinensis58.4729.8584.45328forward
CNT3084175Avena sativaVigna radiata58.6531.5780.85329forward
CNT30508427Avena sativaSolanum lycopersicum14.823.9285.5483forward
CNT30657055Avena sativaTriticum dicoccoides64.3569.0294.46361forward
CNT30141394Avena sativaLolium perenne63.9956.0193.59359forward
CNT306284Avena sativaZea mays41.71109.3587.18234forward
CNT30720909Avena sativaTriticum spelta64.3555.2895.29361forward
CNT30622400Avena sativaCajanus cajan57.9335.5291.69325forward
CNT30154413Avena sativaPrunus persica18.5426.8788.46104forward
CNT30585391Avena sativaEchinochloa crusgalli64.3555.4593.91361forward

Expression of CNT30240007

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MRSSVLFWYLRISRSATVPGLKRWGFFTPPVAGADLRAALVASCFLG

>peptide 2 (31 aa)
MRRASWISLGMMVTRLAWMAQRLVSSKRPTR*

Sequence

>CNT30240007
TGACAAACAAGTAAAGGTACAGAACACATAACTGAGATCTGATAACCAACATTTTCATTGCTGATGATAACAAGAAGGTAACATCAGACAGGACACAGGA
CGACAACATAACACAGACACCATCTAGATTCCAGCACGCACTCAGATACGAACAGGCAAACTTTCCTAACTCCCAGGTCGGACACTACAACGTACTCTAC
GCCCTCTCCCCACGGATGCGGCGGGCGAGCTGGATATCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGCGCAGAGGTTGGTGTCCTCAAAGAGAC
CGACGAGGTAGGCCTCGGCGGCCTCCTGCAGCGCGGAGACGGCGGAGCTCTGGAAGCGGAGGTCGGTCTTGAAGTCCTGGGCGATCTCCCGCACCAGGCG
CTGGAAGGGCAGCTTGCGGATGAGGAGCTCCGTGCTCTTCTGGTACTTGCGGATCTCACGGAGCGCGACGGTGCCGGGCCTGAAGCGGTGGGGCTTCTTC
ACGCCGCCGGTGGCCGGGGCGGACTTGCGGGCGGCCTTGGTCGCCAGCTGCTTCCTCGGCG