Detailed information on CNT30239996


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30220245Avena sativaHordeum vulgare25.6711.9485.7177forward
CNT30139060Avena sativaLolium perenne20.3316.0595.0861forward

Expression of CNT30239996

Peptides detected in this lncRNA

>peptide 1 (98 aa)
EWPRRTGGLNFLHIFSLQDEPTNATGGTCGWPYSSLPCWHCKCLSLGPAKTSSGPGGEHVYLGGLLVCCSVMLGIGLWIWKRVGCCFLCTETGGGCCVW

>peptide 2 (48 aa)
MPLEEHVAGLIHPCHAGTANVYPSARRRQAQDQEESMCISVGFSFAVL*

>peptide 3 (98 aa)
MAKTDRRLKLSPYLQPARRANECHWRNMWLALFILAMLALQMFIPRPGEDKLRTRRRACVSRWASRLLFCDAGNWLVDLEESWLLFPVHRNGWWLLCLG

Sequence

>CNT30239996
TGAATGGCCAAGACGGACAGGAGGCTTAAACTTTCTCCATATCTTCAGCCTGCAAGACGAGCCAACGAATGCCACTGGAGGAACATGTGGCTGGCCTTAT
TCATCCTTGCCATGCTGGCACTGCAAATGTTTATCCCTCGGCCCGGCGAAGACAAGCTCAGGACCAGGAGGAGAGCATGTGTATCTCGGTGGGCTTCTCG
TTTGCTGTTCTGTGATGCTGGGAATTGGCTTGTGGATTTGGAAGAGAGTTGGCTGTTGTTTCCTGTGCACAGAAACGGGTGGTGGCTGCTGTGTCTGGGT