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Detailed information on CNT30239987


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674625Avena sativaSetaria viridis14.9832.3991.392forward
CNT3067537Avena sativaLeersia perrieri15.4732.287.3795forward
CNT30434591Avena sativaPapaver somniferum9.6122.9693.2259reverse complement
CNT30102868Avena sativaOryza rufipogon10.9129.9188.0667forward

Expression of CNT30239987

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MYRMKESKKNVYGSYFSSQLSRSISSLATPFLVSGCLGIHH*

Sequence

>CNT30239987
TATCCTCGCGATTAGCAAAAGGAATTACTGATCAGCAGCGCGATATCAGAAGTCTTTCTCTATAGTACAGGTTTTACTATCTTTTGCATACACAGAAAGA
AGTTACTGTACAGCATCAGCATATCATGCCCACCGTCGAACCTTAGGCCTGGGCGGCGCCACCTCGGAACCAAAGGGTAAATGCAGGTGGCGCGAGTGCG
TGCAAGTTAAGTGTGGGCCAGGATGGTCAGGTAAACGTGAGGGTGTGCGTGTGAGTGCGTGCAAGTTAAGTGTGGGCCAGGATGGTCAGGTAAACTTGAG
GGTGTGCGTGTGCGTGTGCTGCGCAGTGATAAGCGTAAGATGTATCGAATGAAGGAAAGTAAGAAGAACGTATATGGAAGCTATTTCTCCTCTCAGCTCA
GCCGAAGCATTTCATCGCTTGCTACGCCCTTCCTCGTCTCTGGGTGTCTAGGTATCCACCACTAGCCTTTTTTCTTTTAAACCTTGCCATTAATGTTAGG
ACGTCGCTAGCGGGCATCTGGATGCCCGTTCGTACTACCCAGCACTCGCCCTAATTCCGGAAAGACTCCTTCGATCCCAGGTCTCCGCGTGCCTGATCCC
AACCCCATGCGCCT