Detailed information on CNT30239807


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 3e-101

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30689164Avena sativaTriticum urartu55.9460.0894.69471forward

Expression of CNT30239807

Peptides detected in this lncRNA

>peptide 1 (50 aa)
SYDVSQESFHLSTSSAEIDLDNSIIKIHKNHRKIKSSQEIAYTIQFHTTY*

>peptide 2 (46 aa)
MRRCWSGGMPSLSWILAFTLSMVSEDSTSRVMVLPVRVFTKICICEH

>peptide 3 (37 aa)
MRAPLEHTDSTRLVNPKNKAAPWLGGTYWPPRRRSTK*

>peptide 4 (63 aa)
MARRHLLATTEAEHQVKGGLLLDIIVRQGAAILKLLASKDETLLVRGDALLVLDLGLDVVDGV*

>peptide 5 (61 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICMPPRRRSTRWRVDSFWML*

Sequence

>CNT30239807
TAGTTACGACGTTTCACAGGAATCATTTCATCTATCAACCTCATCAGCTGAAATCGATTTAGACAATTCAATTATCAAAATTCACAAGAACCACCGGAAG
ATAAAAAGCAGCCAAGAGATAGCATACACAATACAATTTCACACTACGTATTAGTCTCACTTATTCATTCATATCACAGTTCATCCAGAGCTACTGCACC
ACAGCAGAAGTTTGTAGACACACGCTTTATAACACCTACCACAATACGACAGCACAAATAGAGGGACGACCAAATCATAAGACGACACAATGAGAGCTCC
ACTGGAGCACACCGACAGCACCAGACTTGTGAACCCAAAGAACAAAGCAGCGCCATGGCTAGGAGGCACTTACTGGCCACCACGGAGGCGGAGCACCAAG
TGAAGGGTGGACTCCTTTTGGATATTATAGTCCGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGC
CCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGGACTCAACCTCTAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTG
CATGCCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAG
ATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTATCAGAGGACTCAACCTCAAGGGTGATGGTCT
TGCCGGTGAGGGTCTTCACAAAGATCTGCATCTGTGAACACA