Detailed information on CNT30239793


BLAST search results

BLAST vs Swiss-Prot:
sp|P27497|CB29_MAIZE, E-value = 6e-171

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30103422Avena sativaOryza rufipogon68.9953.3588.58692forward

Expression of CNT30239793

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MAGPSPPFRRRLGRRVPWWWSPLLLQLMCCVLSKSEAVVCEE

>peptide 2 (29 aa)
MAHREWITSSSRFLAKVSGSAESPAVSHP*

>peptide 3 (73 aa)
TSENRPQNLVTCFHRINPRNLHHGSTSQTSCAHLTTCTVSLTPAAHRRGLNPQPYRWLICREQSWWRKPRHCC*

>peptide 4 (46 aa)
MVTRASPKRADDGRSFTAFPAKAGEESAMVVVAIALTVDVLCALQE*

>peptide 5 (79 aa)
MAYLPGTKLVAKAQALLLTGSARWSARFSRGPFPVTMACTKKPNMENMARRPFLSSLTLSSAKASGSSAKPRGSKLPPG*

Sequence

>CNT30239793
TGACATCAGAAAACAGGCCTCAAAATCTAGTAACATGTTTCCATAGGATCAATCCTCGTAATTTACATCATGGTAGTACAAGTCAAACCAGTTGTGCACA
CTTGACCACGTGCACGGTCTCCCTGACACCTGCGGCTCACAGGCGTGGCCTTAATCCGCAGCCTTACAGATGGCTTATTTGCCGGGAACAAAGTTGGTGG
CGAAAGCCCAGGCATTGTTGTTGACAGGGTCGGCCAGGTGGTCGGCGAGGTTCTCGAGAGGGCCCTTTCCGGTGACGATGGCCTGCACGAAGAAGCCGAA
CATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTAACCTTAAGCTCCGCGAAGGCCTCTGGGTCGTCGGCCAAGCCGAGGGGGTCGAAGCTGCCA
CCGGGGTAGAGAGGGTCGACGATCTCACCGAGTGGGCCACCGGCAACACGGTACCCCTCAACGGCGCCCATGAGCACGACCTGGCAGGCCCATATGGCGA
GGATGCTCTGCGCGTGCACTAGGCTCGGGTTGCCGAGGTAGTCGAGGCCTCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCATACGGCCTCACCGAA
CTTGACGCCATTGCGGGCGAGCAACTCAGGGAAGACGCATCCGAGGGCGCCGAGCATGGCCCACCGAGAGTGGATCACCTCGAGCTCCCGGTTCTTGGCA
AAGGTCTCAGGGTCGGCCGAGAGCCCGGCGGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGAGCACGCGGTCGGAGCCATACCATGGGC
TGCCCGAGGACACCGGCTTGGCCTTAGCGGCGGTCTTGCGCATGGTGACGCGGGCCTCGCCGAAGAGGGCAGACGATGGCAGGTCCTTCACCGCCTTTCC
GGCGAAGGCTGGGGAGGAGAGTGCCATGGTGGTGGTCGCCATTGCTCTTACAGTTGATGTGTTGTGTGCTCTCCAAGAGTGAGGCGGTGGTGTGTGAGGA
GAT