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Detailed information on CNT30239042


BLAST search results

BLAST vs Swiss-Prot:
sp|A4QKT9|RBL_CRUWA, E-value = 3e-177

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3060115Brassica oleraceaArabidopsis lyrata56.2728.0196.54664forward
CNT30477828Brassica oleraceaArabidopsis halleri30.2570.1497.48357forward

Expression of CNT30239042

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MILLSINNSMHCTMDVKKCSIISAIMSQTSICGESPC*

>peptide 2 (48 aa)
MHYDRNSQFSGKYSSFDHFFACTRSSIQIMPFDFTCFSLCFINSFGTK*

>peptide 3 (38 aa)
MLPRYQYPWFHIQEYNKSIYTLFNTSFESNTCFSLCLW*

Sequence

>CNT30239042
TGGTAGCGAGACCGAATCTTGAGTGAAAAAGATACCGCGGCTTCGATCTTTTTCAACATAATCATCGCGCAGTAAATCAACAAAGCCCAAAGTTGACTCT
CTATCTCCTTCAAGTTTACCTACTACTGTTCCCACATGAATATGATCTCCACCAGATCGACGTAAAGCTTTAGCTAGTACACGGAAGTGCATACTATGAT
TCTTCTGTCTATCAATAACAGCATGCATTGTACGATGGATGTGAAGAAGTGCTCCATTATCTCGGCAATAATGAGCCAAACTAGTATTTGCGGTGAATCC
CCCTGTTAAGTAGTCATGCATTACGATAGGAACTCCCAATTCTCTGGCAAATACAGCTCTTTTGATCATTTCTTCGCATGTACCCGCAGTAGCATTCAAA
TAATGCCCTTTGATTTCACCTGTTTCAGCCTGTGCTTTATAAATAGCTTCGGCACAAAATAAGAAACGGTCTCTCCAACGCATAAATGGTTGAGAGTTCA
CATTCTCATCATCTTTGGTAAAATCAAGTCCACCACGTAGACATTCATAAACTGCTCTACCATAGTTCTTCGCGGATAACCCCAACTTAGGTTTAATAGT
ACATCCTAATAGGGGACGTCCATACTTGTTCAATTTATCTCTTTCAACTTGGATACCATGAGGTAAACATGTTAGTAACAGACCCTTCTTCAAAAAGGTC
TAATGGGTAAGCTACATACGCAATAAATTGAGTTTCTTCTCCTGGAACGGGCTCGATGTGGTAGCATCGTCCTTTGTAACGGTCAAGGCTGGTAAGCCCA
TCGGTCCACACAGTTGTCCATGTACCAGTAGAAGATTCAGCAGCTACCGCAGCCCCTGCTTCTTCAGGTGGAACTCCGGGTTGAGGAGTTACTCGGAATG
CTGCCAAGATATCAGTATCCTTGGTTTCATATTCAGGAGTATAATAAGTCAATTTATACTCTTTTTAACACCAGCTTTGAATCCAACACTTGCTTTAGTC
TCTGTTTGTGGTGACATAAGTCCCTCCCTACAAGTCATGAATTTAGAATTCTTGCAATAAAACAACAAGGTCTACTCGACATAAATTAGGAATAGATTTA
ATGAACCTTTTTCACAGGAATCTTTCACAAAATTATCAACTAATCAGAATGATTCTTTATTAGACCATGATATTTGATTC