Detailed information on CNT30239040


BLAST search results

BLAST vs Swiss-Prot:
sp|Q04050|NU4M_BRACM, E-value = 5e-103

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374334Brassica oleraceaArabidopsis thaliana52.554.0699.28278forward
CNT30501326Brassica oleraceaCoffea canephora99.814.9996.78528forward
CNT30226086Brassica oleraceaHordeum vulgare99.249.8894.48525forward
CNT30592637Brassica oleraceaMusa acuminata13.9921.0291.8974reverse complement
CNT30544951Brassica oleraceaBrassica napus10084.37100529forward
CNT30688804Brassica oleraceaTriticum urartu99.2414.1795.24525forward
CNT30482060Brassica oleraceaChara braunii17.3925.6388.0492forward

Expression of CNT30239040

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MKGVEQSVASGNMGIENLKNPWVPNFKGIPAKMTDPAVGAST*

Sequence

>CNT30239040
AACGGCCGCCGCCCGACTAAACATACCAATAGTCACCAGATTCATATGGGCTACTGAGGAGTAAGCAATGATCTTCTTTAGATCGATCTGTCTTGAAGTG
GTCAAGGAAGTATATATTATAGCAATCGCGCTTAAAGTATAAATGAAAGGAGTAGAACAAAGTGTCGCTTCGGGAAACATGGGTATTGAAAATCTTAAAA
ACCCGTGGGTTCCAAATTTTAAAGGAATTCCTGCCAAGATGACGGATCCTGCCGTAGGTGCCTCTACATGAGCTTCGGGTAACCAAATATGAACTGGTAC
CATAGGCACTTTGACGGCGAAAGAGGCGAAAGAAGCAATCCATAGAAAGATTTGGCGCCGCTCACTAAATTCTGTGGTTAATGATATTTGTAAATCGGTG
GTTCCTGTTTGGAAAAGAATCAACAGAATAGCTAATAGCATAAAAAGAGATCCAAGTAAAGTATAAAGGAAAAACTGATATGCTGCCTTGATCTTTCTTT
GTCTCGAACCCCATACTCCTATAATAATG