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Detailed information on CNT30239038


BLAST search results

BLAST vs Swiss-Prot:
sp|A4QLB4|RBL_LEPVR, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690840Brassica oleraceaOryza sativa51.6413.9486.18644forward
CNT30678279Brassica oleraceaSetaria viridis28.0740.7987.43350forward
CNT30201083Brassica oleraceaPisum sativum52.0430.489.37649forward
CNT30181337Brassica oleraceaSecale cereale51.6429.9486.96644forward
CNT30290424Brassica oleraceaTriticum aestivum51.6440.2886.96644forward
CNT30225281Brassica oleraceaHordeum vulgare25.996.4289.16323forward
CNT30565170Brassica oleraceaActinidia chinensis40.4244.1393.25504forward
CNT30554212Brassica oleraceaOryza glaberrima51.6417.0786.34644forward
CNT30146680Brassica oleraceaMedicago truncatula21.1721.0793.56264forward
CNT30444217Brassica oleraceaAegilops tauschii33.1272.9784.75413forward
CNT30265852Brassica oleraceaBrassica rapa8.2623.5795.15103forward
CNT302912Brassica oleraceaZea mays51.6480.485.56644forward
CNT30606537Brassica oleraceaGossypium raimondii33.1224.5786.2413forward
CNT30682029Brassica oleraceaTriticum urartu51.6461.0486.96644forward
CNT30595572Brassica oleraceaOryza meridionalis29.9143.5286.86373forward
CNT30355674Brassica oleraceaLactuca sativa45.3976.6991.87566forward
CNT3058691Brassica oleraceaAmborella trichopoda25.0269.885.9312forward
CNT30323704Brassica oleraceaAsparagus officinalis16.5269.3687.86206forward
CNT30121217Brassica oleraceaCitrus clementina40.155.7490500forward
CNT30100001Brassica oleraceaOryza rufipogon20.2998.0683.4253forward
CNT30578317Brassica oleraceaOryza barthii23.961.5785.23298forward

Expression of CNT30239038

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MLPRYQYPWFHIQEYNKSIYTLFNTSFESNTCFSLCLW*

>peptide 2 (48 aa)
MHYDRNSQFSGKYSSFDHFFACTRSSIQIMPFDFTCFSLCFINSFGTK*

>peptide 3 (37 aa)
MILLSINNSMHCTMDVKKCSIISAIMSQTSICGESPC*

Sequence

>CNT30239038
TGGTAGCGAGACCGAATCTTGAGTGAAAAAGATACCGCGGCTTCGATCTTTTTCAACATAATCATCGCGCAGTAAATCAACAAAGCCCAAAGTTGACTCT
CTATCTCCTTCAAGTTTACCTACTACTGTTCCCACATGAATATGATCTCCACCAGATCGACGTAAAGCTTTAGCTAGTACACGGAAGTGCATACTATGAT
TCTTCTGTCTATCAATAACAGCATGCATTGTACGATGGATGTGAAGAAGTGCTCCATTATCTCGGCAATAATGAGCCAAACTAGTATTTGCGGTGAATCC
CCCTGTTAAGTAGTCATGCATTACGATAGGAACTCCCAATTCTCTGGCAAATACAGCTCTTTTGATCATTTCTTCGCATGTACCCGCAGTAGCATTCAAA
TAATGCCCTTTGATTTCACCTGTTTCAGCCTGTGCTTTATAAATAGCTTCGGCACAAAATAAGAAACGGTCTCTCCAACGCATAAATGGTTGAGAGTTCA
CATTCTCATCATCTTTGGTAAAATCAAGTCCACCACGTAGACATTCATAAACTGCTCTACCATAGTTCTTCGCGGATAACCCCAACTTAGGTTTAATAGT
ACATCCTAATAGGGGACGTCCATACTTGTTCAATTTATCTCTTTCAACTTGGATACCATGAGGGATTCGCAGATCCTCTAGACGTAGAGCAGCCAGGGCT
TTGAACCCAAATACGTTACCCACAATTGAGGTAAACATGTTAGTAACAGACCCTTCTTCAAAAAGGTCTAATGGGTAAGCTACATACGCAATAAATTGAG
TTTCTTCTCCTGGAACGGGCTCGATGTGGTAGCATCGTCCTTTGTAACGGTCAAGGCTGGTAAGCCCATCGGTCCACACAGTTGTCCATGTACCAGTAGA
AGATTCAGCAGCTACCGCAGCCCCTGCTTCTTCAGGTGGAACTCCGGGTTGAGGAGTTACTCGGAATGCTGCCAAGATATCAGTATCCTTGGTTTCATAT
TCAGGAGTATAATAAGTCAATTTATACTCTTTTTAACACCAGCTTTGAATCCAACACTTGCTTTAGTCTCTGTTTGTGGTGACATAAGTCCCTCCCTACA
AGTCATGAATTTAGAATTCTTGCAATAAAACAACAAGGTCTACTCGACATAAATTAGGAATAGATTTAATGAACCTTTTTCACAGGAATCTTTCACAAAA
TTATCAACTAATCAGAATGATTCTTTATTAGACCATGATATTTGATT